Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0516 ATGAAACGAATTGAAAATTCGACAAGTCGTCAAGTGACATTCTCAAAGAGACGAAATGGGCTTCTGAAAAAAGCTTATGAATTGTCTGTTCTTTGTGATGCTGAAGTTTCTGTCATAATTTTCTCCCAAAAAGGAAGGCTCTATGAGTTCTCAAGCTCCGACATGCAAAAGACAATTGAACGGTACCGTAGCTATGGGAAAGATGGACAAACCAACCCTTTTCGATCAGAAGGATATATGCAGCAACTGAAGCAAGAAGCTGACATGACAGCAAAGAAAATCGAGCAACTTGAAAAATCACAAGAGAAGCTTTTGGGACGTGGGTTGGATTCTTGTTCCTTTGAGGAACTTCGAGGGATTGAAAGACAGTTGGTACATAGCTTAACCCGTATTAGAGAAACCAAGGCTCAGCTATTCAAGGAGCAGAAAGAGAAGCTGATTGAAAAGGGGAAACTCCTTTTAGAAGAAAATCTAAAGTTATCTGCAAAGTGTGGTACTAAGCCGTGGCAAGAAGGTGGTTTTGAAGGAGAGGGAGGCATAATGAGCAATTTATGCAGCCAAAGTAGCCAAGGTCCTGACATGCAGACTGAATTGTTCATTGGATTGCCTTGCTCATAA 618 41.26 MKRIENSTSRQVTFSKRRNGLLKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSDMQKTIERYRSYGKDGQTNPFRSEGYMQQLKQEADMTAKKIEQLEKSQEKLLGRGLDSCSFEELRGIERQLVHSLTRIRETKAQLFKEQKEKLIEKGKLLLEENLKLSAKCGTKPWQEGGFEGEGGIMSNLCSQSSQGPDMQTELFIGLPCS 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5394920 5408930 - CmPI595203_01g005160.1 Cmu01g0516 406022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0516 205 Coils Coil 80 100 - -
Cmu01g0516 205 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 185 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cmu01g0516 205 FunFam Agamous-like MADS-box protein AGL13 6 71 - -
Cmu01g0516 205 SUPERFAMILY SRF-like 1 71 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu01g0516 205 SMART madsneu2 1 53 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu01g0516 205 ProSiteProfiles K-box domain profile. 80 170 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cmu01g0516 205 ProSiteProfiles MADS-box domain profile. 1 54 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu01g0516 205 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 3 50 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu01g0516 205 Pfam K-box region 81 164 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cmu01g0516 205 PRINTS MADS domain signature 31 52 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu01g0516 205 PRINTS MADS domain signature 16 31 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu01g0516 205 CDD MADS_MEF2_like 1 71 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cmu01g0516 205 Gene3D - 6 101 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0516 Cmu-Chr1:5394920 Cmu06g0023 Cmu-Chr6:256313 1.10E-42 dispersed
Cmu01g0516 Cmu-Chr1:5394920 Cmu05g0867 Cmu-Chr5:7895124 3.90E-48 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5466 PF01486 K-box 2.60E-20 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0516 - - - 0.0