Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0519 ATGTCTTCTACTCCAATTCTCTCTCTCCCTCTCACTCTTAAGCCTTCTCATTTCCCCAATCACACTCTCAAACTTCCCAATTCCTCTCTCTCCCTGCTCCGCCCATCAACTTCCTTCGCGCCATTTTCGACTCCACCACCTCTCAAGCCCTTTAATGGTTCAATCAAAACTAGTAGCAATTCTACTTTCGCCTATGTCACGGGCCCTGCGTCGGACCCTAATGTCAGCGAGTCTGACCCCAAGGTGGACGACGCCTCCGATTCTCAGGTTCGGGTTGTTGGGGTCTTGAATTGGGGGCTCTTCTGGAGGCTTTTGACCAAGCATAAGCTACGGCTTCTAGTTTCTTTGCTTACTCTTGTTTGCTGCAGTACTTGTACTCTTTCAATGCCCTTTTTCTCTGGTAGATTTTTTGAGGTACTTATAGGTGCGAAACCTGGGTCTCTGTGGAGGCTTCTGAGTACGGTTGGAATTTTATATGCATTGGAGCCAATATTAACGGTTTTATTTGTCACAAACATGAATTTCATGTGGGAGAAGGTTATGTCAAGATTAAGAGCCCAGATTTTTGGAAGGTTGCTGATTCAGAAGGTGGAATTCTTTGACAGATACAAGGTTGGTGAAATTACCGGATTGTTAACTTCTGATTTGGGATCTCTTAAGGATGTGAGGCAAGCAACTCTTCACCAAGTACAAGTGATTGGAACAATATGTATATTATTTGCTTTGTCCCCCCAGCTTGCACCTATTCTTGGCCTGCTGATGCTCACAGTATCTGTTTCAGTAGCTGTATACAAGCGATCAACTATTCCTGTATTTAAAGCACATGGATTAGCCCAAGCATCCATGGCTGATTGTGCAACTGAGACATTCTCTGCAATTCGTACTGTGAGATCCTTTGGCGGTGAAAAGCGACAAATGTTCAATTTTGGTCGTCAGGTTATTGCATATGAGGGTAGTGGCATATCACTTGGGACTTATAAATCTCTGAATGAATCTTTAACTAGAGTTGCTGTTTATGTTTCGCTTATGACATTATATTGGCTTGGAGGAGACAAAGTGAAAGCGGGTGAACTTTCTGTTGGAACCATGGCTTCTTTTATTGGATATACTTTCACGTTAACATTTGCTGTTCAAGGATTGGTAAATTCATTTGGAGATCTCCGCCGAACTTTTGCTGCTGTTGAAAGAATTAATTCTGTTTTAAATGAAGAGGTTGATGAAGCCCTTGCATATGGGTTAGAAAAAGAGATGCAACAAAAAGAATTTAGATATAAGTTGCTATTCTCCAGAGATACTGATGAAAGTCCAGTGAAAACACAGTACATGGCAGCCCTAAAATCTTCTAGCAACGTTATCAATCTTGCTTGGTCTGGTGATATTTGTCTTGAAGATGTGTGCTTTTCTTACCCTTTGAGACCGGACGTTGACATTCTTAGCGGTTTGAATTTAACCCTTAAATGTGGAACCATAACGGCGCTAGTGGGCCCTAGTGGAGCAGGAAAGAGTACAATAGTGCAGCTATTGGCACGTTTTTATGAGCCAAAGAAAGGGCAGATAAAAGTTTCTGGTGAAGATATTCGAGCATTTGACAAGAGAGAATGGGCTCGGGCTGTTTCAATAGTGAATCAAGAACCCGTTCTTTTTTCGGTGTCTGTTGGAGAGAATATTGCATATGGACTTCCAGATGATAACGTAACAAAGGATGAAGTTATAAAGGCAGCCAAAGCTGCAAACGCTCATGACTTCATTATTTCACTTCCTCAGGGCTATGACACACCAGTTGGTGAACGCGGAGGCCTTCTCAGTGGTGGCCAGCGACAGAGAATTACAATTGCGAGAGCTTTGCTTAAGAATGCTCCAATCCTTATACTTGATGAGGCGACCAGTGCCCTAGATGCAGTTAGTGAGCGACTAGTCCAGGACGCGCTGAACCATCTAATGAAGGGAAGGACAACATTGGTGATTGCACACCGATTGAGTACCGTTCAAAATGCCCATCAAATTGCATTTTGTTCTGATGGAAAAATTGTAGAGCTGGGAACTCATTTGGAACTACTGGCTCGGAAAGGTCGGTATGCTTCATTAGTTAGCACACAAAGGCTGGCATTTGAGTAA 2115 42.98 MSSTPILSLPLTLKPSHFPNHTLKLPNSSLSLLRPSTSFAPFSTPPPLKPFNGSIKTSSNSTFAYVTGPASDPNVSESDPKVDDASDSQVRVVGVLNWGLFWRLLTKHKLRLLVSLLTLVCCSTCTLSMPFFSGRFFEVLIGAKPGSLWRLLSTVGILYALEPILTVLFVTNMNFMWEKVMSRLRAQIFGRLLIQKVEFFDRYKVGEITGLLTSDLGSLKDVRQATLHQVQVIGTICILFALSPQLAPILGLLMLTVSVSVAVYKRSTIPVFKAHGLAQASMADCATETFSAIRTVRSFGGEKRQMFNFGRQVIAYEGSGISLGTYKSLNESLTRVAVYVSLMTLYWLGGDKVKAGELSVGTMASFIGYTFTLTFAVQGLVNSFGDLRRTFAAVERINSVLNEEVDEALAYGLEKEMQQKEFRYKLLFSRDTDESPVKTQYMAALKSSSNVINLAWSGDICLEDVCFSYPLRPDVDILSGLNLTLKCGTITALVGPSGAGKSTIVQLLARFYEPKKGQIKVSGEDIRAFDKREWARAVSIVNQEPVLFSVSVGENIAYGLPDDNVTKDEVIKAAKAANAHDFIISLPQGYDTPVGERGGLLSGGQRQRITIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIAFCSDGKIVELGTHLELLARKGRYASLVSTQRLAFE 704
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5442484 5449550 + CmPI595203_01g005190.1 Cmu01g0519 406025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0519 704 Gene3D ABC transporter type 1, transmembrane domain 97 407 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cmu01g0519 704 SUPERFAMILY ABC transporter transmembrane region 101 406 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cmu01g0519 704 Gene3D - 458 701 IPR027417 -
Cmu01g0519 704 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 460 698 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cmu01g0519 704 Pfam ABC transporter 478 629 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cmu01g0519 704 FunFam ATP-binding cassette sub-family B member 8, mitochondrial 458 702 - -
Cmu01g0519 704 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 451 699 IPR027417 -
Cmu01g0519 704 CDD ABC_6TM_TAP_ABCB8_10_like 120 397 - -
Cmu01g0519 704 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 113 389 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cmu01g0519 704 ProSitePatterns ABC transporters family signature. 601 615 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Cmu01g0519 704 CDD ABC_MTABC3_MDL1_MDL2 460 699 - -
Cmu01g0519 704 Pfam ABC transporter transmembrane region 112 376 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cmu01g0519 704 SMART AAA_5 487 681 IPR003593 GO:0016887(InterPro)
Cmu01g0519 704 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 93 700 IPR039421 GO:0005743(PANTHER)|GO:0015421(PANTHER)|GO:0090374(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0519 Cmu-Chr1:5442484 Cmu04g1206 Cmu-Chr4:26611340 1.90E-86 dispersed
Cmu11g0256 Cmu-Chr11:3089894 Cmu01g0519 Cmu-Chr1:5442484 3.30E-08 dispersed
Cmu01g0519 Cmu-Chr1:5442484 Cmu05g0295 Cmu-Chr5:2497784 2.30E-23 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0519 K05657 - csv:101211598 1203.73