Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0524 ATGATTGTAAGGCCATCCAGTCTGCTGGTTGCTAGATTAACCAAGGACATAGTTGAAACATACAGAAAATGCAACCCAGAGTTTAAATATTCAGAAGAGTTAAATCTGAAGAGATTTTTGACGAGCCCATCAATTGGAGTCCTCAATGATGGCTATGATAATGTGAACTCAGATCTTATCTTGGCGGTGAACTCTGTTTTACTCAATTTTGATACGCAACGGAGATATGTTGTCAAAGATCTACTTGGTCATGGGACTTTTGGGCAGGTTGCTAAATGCTGGGTTGCGGAAACTAACAGCTTTGTAGCTGTGAAGATCATAAAGAACCAACCTGCGTATTATCAGCAAGCACTAGTTGAAGTATCTATTTTATCATTGTTAAATCAGAAGTATGATCCTGAGGACAAGCATCATATTGTCCGTATTTATGATTACTTTGTATATCAACGTCATCTGTGCATTTGCTTTGAGCTGCTTGATACAAATTTGTATGAGCTTATCAAGATCAATCATTTTAGGGGGTTGTCATTGAGCATTGTTCAAATGCTGTCCAAGCAGATCTTATGTGGGCTTGCTCTATTAAAAGATGCTGGCATTATTCATTGTGATTTAAAGCCGGAAAATATTCTTTTATGCACAAGCAGCGCGAAGCCGGCAGAAATTAAGATAATCGACTTCGGATCAGCTTGCATGGAAGACCGCACTGTTTATTCTTACATCCAGAGCCGCTACTACAGGTCTCCAGAAGTTCTGCTCGGATATCAATACACTACAGCTATTGATATGTGGTCCTTTGGTTGCATAGTTGCTGAGTTGTTTCTTGGACTGCCATTATTTCCAGGGGCTTCTGAGTTTGATTTATTGAGGCGGATGATCGACATTCTTGGGGGACAGCCTCCGGATTATGTTCTGAAGGAGGCAAAACATACTAGCAAATTCTTTAAGTTTATTGGAGGTTTCCATAATGAAAACGGTGAAATTTGTGCAAGTGGCCGAAGTACTTTTCAAGCATTAAAAGCAGATGAATATGAAGCTAGAGAGATGAAAAAGCCTTCAATTGGAAAAGAGTATTTCAATCGAATGGACCTTGAAGCAATTGTGACTAACTACCCTTATAGAAAAAACTTGGCTGAGGAAGATATTAGAAAAGAGAGTCAAGTACGATTGGCCTTAATTGATTTCCTTAAGGGCCTCGTGGAGTTTGATCCTGCAAAAAGGTGGTCACCTTTCCAGGCCTCCAAACACCCTTTTGTGACAGGAGAGCCTTTCACATGCCCATACACGCCTCCACCAGAGTCCCGGCGTTTGCCTGTTTCACAGAACATAAAGGTGGATGACCATCATCCAGGTGGAGGGCATTGGTTTGCAGCTGGTCTCTCTCCCAATATTGCAGGTAGGAACAGAGTTCTTCAGAGCAGCCCACACTTTCAAATGGTACCATATGCCCATGCCAACAGTTATGGGAGTGTTGGAAGTCATGGTAGCTACAATGAAAGTATTGGGTTTGGGAACAGCTATGGAAGTTACGGGGACAATGGTATGCTTGCATATTATTCGCCTGTTGGTCCATCTGGAATGAATATGCATCCACAAGGAAGAATATCAGTGCTTGCAAGTAGCCCAGATACTCGGCAGAGGATTTTCCAATTATCACATGGTAATGGGATTGGTGTGAGCCCATCAACTGGGAACTTTGCACCACTGCCCCTAGGCACGAGTCCCTCGCAGTTTACTCCACCAAGTAGTTATGGTCAAGTTTCAGTGGGCTCTCCTGGACATTATGGGCCAACTTCTCCTGCAAGGAGTAGCTGTCAGGGGTCGCCCCTGGGAAAAATGGCTACAGTTGGTCAATTTAATAGGAGGAAATTTTGGGATTACTCTGGTACTCATGATGGTTCTTCATCTTCGCACTGCCAAGGGCAATCTACTGAAGGCACAAGTTACAGTCAAGCAGATGGGAACTCTTTACATGGTTGCTCACCATCTCATTTGCCACCGAGTAGCAATGCCACCAGCTGGAAGCAGCAGCAAGTAGGTAGTGGAAGCTCTGCTGGATACCCTACCATTCAGAGTATGCCAGGATCTCATTTGCCTGGATCAAATATGCAATTTTCACAACCAACGGATGTGGTTCGTAATAAGTCTGAATTGCCTGATCCTGGAGATTGGGATCCCAATTATAGTGATGAACTACTCCTCCAAGATGATGGTGATTCAAATGTCAGCAGCATTTTGACTGATTTTAGCAACATGCATGTGGGTTCATCAAATCCATCTACTGGGATTGGAAGATTTAGTATGCCAAGCGCTAGTTTGAATTTAACCTCACAAAGAAAAACCGGACCTGTCCAAGCATTTCCGCATGTAGAGGTGGGTAGTCCGCCCTCAGCTCAAGATTTGCACACTGGATATGCTCGTTCCTCATCAAAGCATTCCCATTTCATGCCTCATAATTCCCCAAGCCGATTGGGACAGCAACCTGTTCAGCGGTTCAATCAAGGGAGAAGCCCAAACGTTCGAGGTTACGAGTGGAACCCTGTGAAGATCCAACCACCCCTTCCCAGCTATAATTCTGGAGGCCCACGTTCTCCTGGAAGTGGCTCCTTCAGCAGTGGCATGTCATGGGGGTTTAGAGCGAATCAGCCTGTTACAAGCATTCCTCCAGCATCATCTCGTGGAAGAAAAGACTATGGGAGGATCTAG 2703 44.06 MIVRPSSLLVARLTKDIVETYRKCNPEFKYSEELNLKRFLTSPSIGVLNDGYDNVNSDLILAVNSVLLNFDTQRRYVVKDLLGHGTFGQVAKCWVAETNSFVAVKIIKNQPAYYQQALVEVSILSLLNQKYDPEDKHHIVRIYDYFVYQRHLCICFELLDTNLYELIKINHFRGLSLSIVQMLSKQILCGLALLKDAGIIHCDLKPENILLCTSSAKPAEIKIIDFGSACMEDRTVYSYIQSRYYRSPEVLLGYQYTTAIDMWSFGCIVAELFLGLPLFPGASEFDLLRRMIDILGGQPPDYVLKEAKHTSKFFKFIGGFHNENGEICASGRSTFQALKADEYEAREMKKPSIGKEYFNRMDLEAIVTNYPYRKNLAEEDIRKESQVRLALIDFLKGLVEFDPAKRWSPFQASKHPFVTGEPFTCPYTPPPESRRLPVSQNIKVDDHHPGGGHWFAAGLSPNIAGRNRVLQSSPHFQMVPYAHANSYGSVGSHGSYNESIGFGNSYGSYGDNGMLAYYSPVGPSGMNMHPQGRISVLASSPDTRQRIFQLSHGNGIGVSPSTGNFAPLPLGTSPSQFTPPSSYGQVSVGSPGHYGPTSPARSSCQGSPLGKMATVGQFNRRKFWDYSGTHDGSSSSHCQGQSTEGTSYSQADGNSLHGCSPSHLPPSSNATSWKQQQVGSGSSAGYPTIQSMPGSHLPGSNMQFSQPTDVVRNKSELPDPGDWDPNYSDELLLQDDGDSNVSSILTDFSNMHVGSSNPSTGIGRFSMPSASLNLTSQRKTGPVQAFPHVEVGSPPSAQDLHTGYARSSSKHSHFMPHNSPSRLGQQPVQRFNQGRSPNVRGYEWNPVKIQPPLPSYNSGGPRSPGSGSFSSGMSWGFRANQPVTSIPPASSRGRKDYGRI 900
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5492085 5508061 + CmPI595203_01g005240.1 Cmu01g0524 406030

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0524 900 SUPERFAMILY Protein kinase-like (PK-like) 70 440 IPR011009 -
Cmu01g0524 900 MobiDBLite consensus disorder prediction 859 888 - -
Cmu01g0524 900 MobiDBLite consensus disorder prediction 568 611 - -
Cmu01g0524 900 MobiDBLite consensus disorder prediction 798 900 - -
Cmu01g0524 900 Gene3D Phosphorylase Kinase; domain 1 41 156 - -
Cmu01g0524 900 Pfam Protein kinase domain 76 418 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g0524 900 PANTHER DUAL SPECIFICITY PROTEIN KINASE 13 423 IPR050494 GO:0004674(PANTHER)|GO:0004713(PANTHER)|GO:0005737(PANTHER)|GO:0018105(PANTHER)|GO:0018107(PANTHER)
Cmu01g0524 900 SMART serkin_6 76 418 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g0524 900 Gene3D Transferase(Phosphotransferase) domain 1 157 419 - -
Cmu01g0524 900 FunFam Dual specificity tyrosine-phosphorylation-regulated kinase 1A 39 155 - -
Cmu01g0524 900 ProSiteProfiles Protein kinase domain profile. 76 418 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g0524 900 MobiDBLite consensus disorder prediction 800 839 - -
Cmu01g0524 900 ProSitePatterns Protein kinases ATP-binding region signature. 82 105 IPR017441 GO:0005524(InterPro)
Cmu01g0524 900 CDD PKc_YAK1 76 418 - -
Cmu01g0524 900 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu01g0524 900 MobiDBLite consensus disorder prediction 628 706 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0524 K18670 - - csv:101210441 1727.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0524 Cmu-Chr1:5492085 Cmu01g2036 Cmu-Chr1:33429183 9.60E-30 dispersed
Cmu04g1312 Cmu-Chr4:27409778 Cmu01g0524 Cmu-Chr1:5492085 2.10E-48 transposed
Cmu11g0620 Cmu-Chr11:6772232 Cmu01g0524 Cmu-Chr1:5492085 1.00E-50 transposed
Cmu01g0524 Cmu-Chr1:5492085 Cmu05g2340 Cmu-Chr5:32639373 2.10E-37 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g291 . . Bda01g01858 . . . Bma14g01704 . . Cmo18g01042 . Cma18g01030 . Car18g00952 Sed14g1516 Cpe09g00291 . Bhi07g01339 Tan04g0874 Cmetu10g1483 Lac13g0482 Hepe01g1204 . . Cla05g02311 Cam05g2484 . . Clacu05g2479 Cmu05g2340 . . . Cone6ag0456 Cone9ag0467 Lsi04g00266 Csa05g02600 Chy10g01135 Cme10g00272 . Blo11g00836 . . Bpe11g01696 . . . . . . . Cma15g01400 . Car15g01262 Cpe13g00051 . . . . . . . . Cla01g00533 Cam01g0553 Cec01g0545 Cco01g0569 Clacu01g0551 Cmu01g0524 Cre09g1986 Lsi09g00576 . Chy09g00937 Cme09g01465
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006755 0 3 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75194 PF00069 Pkinase 4.20E-50 CL0016 Cmu PK