Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0540 ATGTATATAACTGACCTCCCCTTTCTTCCTTCTTCTTCCTCTTTCTCTCTCTCGGATTTCAATTCTCCGAATTCACAGCGAAGCGAAGGCTTTAGCTTCCATTACTTGTCTGGTTTCAGCCTCTTTTCCGCTTTTCAAGGCGAGATATTGGCTCTTGAAAGTGGTTATTTGAATTACGTTTCTGGTCTTCTGCATATTGTTGAAATAGCAACCAGGATCGCAGATCACACGCACATTGCAATCTGGTGGTTAAGAACTTTGAAGAGACTGGCTCTAGAGAGTTACTTGGACGCTGGCCACCAAGGATTGGTGCCCCCAATGGCAGCTTCTCGGGTGGCTGGAGGATTAGCGCAATCTTCCTCAAGTTCTGGGATTTTTTTCCAAGGAGATGGGCAGTCCAAGGCTACTGTTAAATCTCACTTGGGCTCATCTTATGGAAACTCATCAAATTCAATTCTAGGAACTGGCCATTCAAATTTGGGTCCAGTTTCTGGGGACACAAATGGTATGTTTAATAGTGTGGCAAACTCAGGACCAAGTGTTGGGGCAAGTTCTTTGGTTACAGATGCAAATTCTGCTCTTTCAGGTGGGCCTCACTTGCAGAGAAGTCCAAGCATGAATGCAGAATCATACATGCGATTACCTACATCGCCTATGTCTTTTACATCAAATAACATGAGTGTCTCAGGTGCATCACTCATTGATGCATCTTCTGTACTGCAGCACAATTCTCAGCAGGATCATAATGCTTCCCAATTGCCACAGAACCAGCAACAGGCCCGACAAGTTTCTTCAGGTGATGCGTTACTGTCTAATTCACAAACTGTCCAAGCTTCACTCCCCATGGGTGCACGTGTCTCTGGATCTCTCATGACAGATCCCAATAGTTATTCTCAGTCACAGAAGAAACCACGCTTGGATATTAAGCAGGATGATTTTCTGCAACAGCAGGTACTACAACAGCTACTGCAGAGACAAGATTCCATGCAATTGCAAGGTCGTAATACACCTCAGTTACAAGCAGCATTATTTCAGCAGCAACAGAGATTACGACAACAGCAACAAATTTTTCAGTCTTTACCTCCTTTGCAGAGAGCTCATATGCAGCAGCAGCAGCAGATACAGTTGAGGCAGCAACTTCAGCAACAGGCAATACAGCCTGTAAATGCTATGAAGCGGCCTCATGATGGTGGTGTGTGTGCTCGGCGGCTAATGCAGTACCTATACCATCAGCGTCAAAGGCCTGCTGATAATAGTATTGCCTATTGGAGGAAGTTCGTGACTGAATATTATTCCCCTCGTGCAAAGAAAAGATGGTGTTTGTCATTATATAACAATGTTGGGCATCATGCACTTGGTGTCTTCCCTCAAGCAGCCATGGATGCATGGCAGTGTGACATTTGTGGTTCAAAATCAGGACGGGGATTTGAGGCTTCCTTTGAAGTGCTTCCTAGGCTTAATGAGATCAAATTTGGCAGTGGAGTCATTGATGAGCTATTGTTCTTGGATATGCCACGGGAATTCAGATATTCATCTGGAATCATGATGTTAGAATATGGAAAAGCAGTACAAGAGAGTGTATATGAGCAACTTCGTGTTGTTCGTGAGGGACAGCTTCGTATCATATTTACTCATGAATTGAAGATATTGGCATGGGAATTTTGTGCAAGACGCCATGAAGAACTTCTTCCTCGTAGACTGGTTGCACCTCAGGTGAATCAGTTGGTCCAGGTGGCACAGAAATGCCAGAGCACTATTGCTGAAGGAGGATCTGATGGGGCTTCTCAGCAGGATTTACAAGCAAATAGTAATATGGTTTTGACAGCTGGGCAGCAGCTTGCCAAGAGTCTGGAGTTGCAGTCACTGAATGATTTGGGGTTCTCTAAAAGATACGTCAGATGCTTGCAGATATCAGAGGTTGTCAATAGCATGAAAGATTTGATTGATTTCTGTAGGGAGCAGAAAACCGGACCAGTTGAGGGTCTGAAAAGTTATCCTCAGCACGCCACAGCCAAGCTGCAGATGCAAAAAATGCAAGAGATTGAGCAGGTTGCTACTGCTCAGAGTCTGCCAACCGACCGTAACACCCTTAATCGAATGGTCGCGATGCATCCTGGGCTGAACAACCAAATGAATAGCCAAAATCAACTAGTCGGCAGAGGAACTTTGAGTGGTTCAGCACAAGCTGCGTTGGCATTGTCTAACTACCAGAATCTGCTAATGAGACAGAACTCCATGAATTCAACAAGTTCAAACCCACTCCAGCAGGAGACATCATCGTCATTCAATAACTCAAACCAGAGTCCTTCATCAAGCTTTCCTGGAACAACTGCTATAGCATCGGCACCGATGCAGACCTTGCCCAGCAGTGGTCTTTCAAGTCCTAATCTGCCTCAGCAGCAATCTCAAGTTCAACAGCAACTGCATCAGCGCCCAAACACCAACAACTTACTCGTGCAACATCATCCTCAGAGTACGCAAGGTAACAGTAACACTATGCAACATCAGATGATCCAGCAACTACTCCAGATATCTAATAACAGTGGGGGAGGACAACAGCAACCACTTTCTGGATCAAACACAAAAGCAAGCATTGCCGGAGCTTATACGGGATACGGAGGCAGCTCTTCTGTGGTGGCTGCAGGCACAGCCAATGCATCTGGTAGTAATACGCCTGCTCCAAGCCGAAGCAACAGTTTCAAAAGTGCTTCAACTGGTGACGTATCAGCAGCCGGTGCTCGTAGCAGTGGGTTCAACCAAAGAAGTGCAGATTTGGCACAAAATCTTCATTTGGATGAGGATATAATGCAGGATATAGCCCATGATTTTACAGATAATGGGTTTTTTAACAGTGATCTTGATGATAATATGTGCTTCACCTGGAAAGGTCAACTAACATAA 2901 45.02 MYITDLPFLPSSSSFSLSDFNSPNSQRSEGFSFHYLSGFSLFSAFQGEILALESGYLNYVSGLLHIVEIATRIADHTHIAIWWLRTLKRLALESYLDAGHQGLVPPMAASRVAGGLAQSSSSSGIFFQGDGQSKATVKSHLGSSYGNSSNSILGTGHSNLGPVSGDTNGMFNSVANSGPSVGASSLVTDANSALSGGPHLQRSPSMNAESYMRLPTSPMSFTSNNMSVSGASLIDASSVLQHNSQQDHNASQLPQNQQQARQVSSGDALLSNSQTVQASLPMGARVSGSLMTDPNSYSQSQKKPRLDIKQDDFLQQQVLQQLLQRQDSMQLQGRNTPQLQAALFQQQQRLRQQQQIFQSLPPLQRAHMQQQQQIQLRQQLQQQAIQPVNAMKRPHDGGVCARRLMQYLYHQRQRPADNSIAYWRKFVTEYYSPRAKKRWCLSLYNNVGHHALGVFPQAAMDAWQCDICGSKSGRGFEASFEVLPRLNEIKFGSGVIDELLFLDMPREFRYSSGIMMLEYGKAVQESVYEQLRVVREGQLRIIFTHELKILAWEFCARRHEELLPRRLVAPQVNQLVQVAQKCQSTIAEGGSDGASQQDLQANSNMVLTAGQQLAKSLELQSLNDLGFSKRYVRCLQISEVVNSMKDLIDFCREQKTGPVEGLKSYPQHATAKLQMQKMQEIEQVATAQSLPTDRNTLNRMVAMHPGLNNQMNSQNQLVGRGTLSGSAQAALALSNYQNLLMRQNSMNSTSSNPLQQETSSSFNNSNQSPSSSFPGTTAIASAPMQTLPSSGLSSPNLPQQQSQVQQQLHQRPNTNNLLVQHHPQSTQGNSNTMQHQMIQQLLQISNNSGGGQQQPLSGSNTKASIAGAYTGYGGSSSVVAAGTANASGSNTPAPSRSNSFKSASTGDVSAAGARSSGFNQRSADLAQNLHLDEDIMQDIAHDFTDNGFFNSDLDDNMCFTWKGQLT 966
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5675946 5688901 - CmPI595203_01g005400.1 Cmu01g0540 406046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0540 966 MobiDBLite consensus disorder prediction 289 303 - -
Cmu01g0540 966 Pfam LIM-domain binding protein 403 663 IPR029005 -
Cmu01g0540 966 PANTHER LIM DOMAIN-BINDING PROTEIN 121 952 IPR029005 GO:0000122(PANTHER)|GO:0005634(PANTHER)|GO:0005667(PANTHER)|GO:0045944(PANTHER)
Cmu01g0540 966 MobiDBLite consensus disorder prediction 285 305 - -
Cmu01g0540 966 MobiDBLite consensus disorder prediction 241 268 - -
Cmu01g0540 966 MobiDBLite consensus disorder prediction 884 917 - -
Cmu01g0540 966 MobiDBLite consensus disorder prediction 745 810 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0540 Cmu-Chr1:5675946 Cmu05g0886 Cmu-Chr5:8075942 5.40E-265 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0540 - - - 0.0