Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0556 ATGAAAGCGATGAAAAGAGACGCTGTTTACGGAAAATCACCTGGTGACAAAATCGCTCTCGCTTCACCATTAACAGCTCCCACCATATTCGGCACGGCAGCCACGTGTAATATCCTAGTTGGCTGCCAGCTTTTCATCCTTTCATCTAATTTCTTCATCTTCTCTCTTCTTCTGAACCTCACTCTCTCTCTTCCTTTCTCGCTTGCATTCTTCCTTCCACCAATGACGGACACTACTGACGATATCGCTGAAGAAATCTCCTTCCAGAGCTTCGACGATGACTGTAAATTGCTTGGCAACCTTCTTCACGATGTCTTACAGCGCGAAGTTGGCACCGAATTCATGGACAAACTTGAACGAACTCGAGTCCTCGCTCAGAGCGCCTGCAATATGAGGATGGCGGGCATCGAGGATACGGCAGATATGCTCGAGAGGCAGCTTGCATCGGAGTTGTCGGAAATGACTTTAGACGAAGCGTTCTCTCTGGCTCGTGCATTCAGCCATTCTCTCAATTTGATGGGGATTGCAGAAACCCACCACAGGGTTCGTAAGTCGAGAAATATTGCACCTCTATCAAGATCCTGCGATGAAGTTTTTAATCAGCTAGTGCAGGGCGGAGTTTCTCCTGACGAGCTTTACGACAGTGTTTGCAAGCAGGAGGTTGAAATTGTTCTTACAGCACATCCAACTCAAATTAATCGTCGTACTTTGCAATACAAACATCTTCGCATTGCACATCTATTGGACTACAATGACCGACCTGACCTTAGTCCTGAAGATCGGGAAATGCTAATTGATGATCTGGTGAGAGAGATAACTTCAATATGGCAGACAGATGAACTTAGACGCCACAAGCCCACACCAGTTGATGAAGCTAGGGCTGGCTTGAACATTGTGGAACAGTCCCTGTGGAAAGCTGTGCCTTATTATTTACGTCGACTCAGCAATGCCTTAAAGAAGCACACTGGAAGGTCGCTTCCTTTGACTTGCACACCAATAAAATTTGGGTCTTGGATGGGAGGCGATAGGGATGGAAATCCAAATGTCACAGCAAAAGTCACAAGAGACGTCTCTCTTTTGTCTAGGTGGATGGCTATTGATCTATACATTCGAGAGCTTGATAGCTTGCAGTTTGAACTTTCCATGCACCGATGCAGCGATAGATTATACAGACTGGCACATGAAATTCTTGAAAAGGAAGCTGTAGCTGAAGATCGACACGAGATATGGAATCAGTCTTCAAGCAAAAATGAATTGAAGAATCAGGGCCATCAAGCTGCTGCACTTCCAAGACAACTTCCACTTAGGGCTGATCTACCTTCATGCACGGATTGCAATGATGGTGAATCCAGGTATTCTAGAGTCGAATTTCCGAGGACTGATCATACGTCATCAAATAATCAGGAAATTACTGTTCCTGATACAAGTGCATCTTTATCAAATGGGAATTCATCTAGTGCAAGTGCATTTCAGTCGAATTCTATGCCTCGTAGTGCATCTTTCAACTCGACTCAACTCCTTGCTCAGAGGAAACTGTTTGCAGAATCTCAGATTGGGAGGACCAGTTTTCAGAAGCTTTTAGAACCCAGGCTCCCTCTACGTCCTGGAATTGCACCCTACCGCGTTGTGCTGGGTAGTGTAAAAGACAAGCTTGTAAAAACACGGAGGAGGCTGGAGCTGCTTCTTGAGGATCTTCCTTGTGAACAAGATCCTTCGGATTACTATGAGACTGCAGATCAACTATTGGAGCCGCTGCTTTTATGCTATGAGTCTCTGCAATCATGTGGATCTGTGGTGCTTGCTGATGGTCGGTTAGTTGATCTGATTAGAAGAGTTGCTACATTTGGTATGGTATTAATGAAGCTGGATTTACGTCAGGAATCTGGTAGACATGCCGAAACTTTGGACGCCATTACAACGTATTTGGACATGGGTTCATATAGTGACTGGGATGAAGAAAGGAAGTTGGAATTTCTAACAAGAGAGCTGAAGGGGAAGCGACCACTAGTTCCTCCAACTATTGAGGTTCCTTCTGATGTTAAAGAAGTTTTGGATACCTTTCGTGTTGCTGCTGAACTAGGGAGTGAATCACTTGGTGCCTATGTGATCTCTATGGCCTCGAATGCAAGTGACGTCCTTGCAGTGGAACTTCTGCAGAAGGATGCACGACTTGCTGTTAGTGGCGAGTTAGGACGACCGTGTCCTGGTGGAACGTTGCGGGTGGTTCCTCTGTTTGAAACTGTGGACGACTTGAGGAAAGCAGGATCGTCGATCAGGAAACTATTATCTATTGATTGGTATCGAGAACACATAATAAAGAACCATAATGGGCATCAAGAGGTCATGGTAGGTTATTCTGATTCTGGAAAAGATGCTGGGCGCTTCACTGCTGCATGGGAACTTTACAAAGCTCAAGAAGATGTTGTGGCTGCATGTAACGAGTATGGTATTAAAGTTACCCTGTTCCATGGGCGTGGAGGGAGCATCGGCCGTGGTGGTGGGCCAACGTATCTGGCCATTCAATCGCAGCCTCCAGGTTCGGTAATGGGTACTTTACGATCAACTGAGCAAGGGGAGATGGTACAGGCGAAGTTCGGGTTGCCGCAGACTGCTGTTAGACAGCTAGAGATATATACCACGGCCGTACTCCTTTCAACCCTGCGTCCACCACTTCCACCTCGAGAAGCAAAATGGCGTAAGCTCATGGAGGAGATCTCAAAAATCAGCTGTGAGAATTACCGGAGCATGGTATATGAAAATCCAGAATTCATTTCATACTTCAATGAGGCCACTCCCCAAGCAGAGCTTGGCTTCCTTAACATTGGAAGCCGGCCAACAAGAAGAAAGACCTCTGTTGGGATCGGGCATCTTCGAGCTATACCATGGGTTTTTGCTTGGACACAAACTAGATCTGTTCTTCCAGCTTGGCTTGGGGTTGGGGCAGGTTTAAAAGGTGTATGTGAAAAGGGTCACACTGAAGACTTGAAATCAATGTACGAAGAGTGGCCTTTCTTCCAGAGCACCCTAGACCTTATAGAGATGGTTTTGGGGAAAGCTGATACTCACATTGCAAAGCATTATGATGAAGTCCTTGTGTCGGAGAGTCGGCGCGAAATCGGATCTACATTGAGGAAGGAACTAGTAGAGACTGAGAAATATGTTTTGGTAGTAAGCAGACATGGGAAACTGTCTGAGAACAATCGAAGTTTGAGAAAGCTGATCGAAAGCAGACTTCATTATCTTAATCCTTTGAACCTACTACAAGTTGAGATATTAAAAAGGCTGAGATGTGATGCAGAGAACAACAAACTAAGAGATGCATTGCTTATTACTATCAATGGGATAGCAGCTGGAATGAGGAACACAGCTGCTGGCCATGTGAACGCTAGAGAAAAGGAAGAAAAAGTTGAAACAATTTTAACACTTCTAATTCAGGCCCAAACCATCCCTTGGGTGGGTTGGGCTCTGGCCTGGGCTTTACTTTTTAGGACCAGTTCGGCCCAATGA 3507 45.57 MKAMKRDAVYGKSPGDKIALASPLTAPTIFGTAATCNILVGCQLFILSSNFFIFSLLLNLTLSLPFSLAFFLPPMTDTTDDIAEEISFQSFDDDCKLLGNLLHDVLQREVGTEFMDKLERTRVLAQSACNMRMAGIEDTADMLERQLASELSEMTLDEAFSLARAFSHSLNLMGIAETHHRVRKSRNIAPLSRSCDEVFNQLVQGGVSPDELYDSVCKQEVEIVLTAHPTQINRRTLQYKHLRIAHLLDYNDRPDLSPEDREMLIDDLVREITSIWQTDELRRHKPTPVDEARAGLNIVEQSLWKAVPYYLRRLSNALKKHTGRSLPLTCTPIKFGSWMGGDRDGNPNVTAKVTRDVSLLSRWMAIDLYIRELDSLQFELSMHRCSDRLYRLAHEILEKEAVAEDRHEIWNQSSSKNELKNQGHQAAALPRQLPLRADLPSCTDCNDGESRYSRVEFPRTDHTSSNNQEITVPDTSASLSNGNSSSASAFQSNSMPRSASFNSTQLLAQRKLFAESQIGRTSFQKLLEPRLPLRPGIAPYRVVLGSVKDKLVKTRRRLELLLEDLPCEQDPSDYYETADQLLEPLLLCYESLQSCGSVVLADGRLVDLIRRVATFGMVLMKLDLRQESGRHAETLDAITTYLDMGSYSDWDEERKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSESLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVDDLRKAGSSIRKLLSIDWYREHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEYGIKVTLFHGRGGSIGRGGGPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLSTLRPPLPPREAKWRKLMEEISKISCENYRSMVYENPEFISYFNEATPQAELGFLNIGSRPTRRKTSVGIGHLRAIPWVFAWTQTRSVLPAWLGVGAGLKGVCEKGHTEDLKSMYEEWPFFQSTLDLIEMVLGKADTHIAKHYDEVLVSESRREIGSTLRKELVETEKYVLVVSRHGKLSENNRSLRKLIESRLHYLNPLNLLQVEILKRLRCDAENNKLRDALLITINGIAAGMRNTAAGHVNAREKEEKVETILTLLIQAQTIPWVGWALAWALLFRTSSAQ 1168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5952262 5964322 + CmPI595203_01g005560.1 Cmu01g0556 406062

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0556 1168 ProSitePatterns Phosphoenolpyruvate carboxylase active site 2. 781 793 IPR033129 -
Cmu01g0556 1168 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 224 235 IPR018129 -
Cmu01g0556 1168 MobiDBLite consensus disorder prediction 413 432 - -
Cmu01g0556 1168 Pfam Phosphoenolpyruvate carboxylase 534 1122 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Cmu01g0556 1168 Pfam Phosphoenolpyruvate carboxylase 93 399 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Cmu01g0556 1168 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 91 1122 IPR015813 GO:0003824(InterPro)
Cmu01g0556 1168 PRINTS Phosphoenolpyruvate carboxylase signature 335 350 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Cmu01g0556 1168 PRINTS Phosphoenolpyruvate carboxylase signature 276 292 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Cmu01g0556 1168 PRINTS Phosphoenolpyruvate carboxylase signature 223 236 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Cmu01g0556 1168 Coils Coil 133 153 - -
Cmu01g0556 1168 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 75 1122 IPR021135 GO:0005829(PANTHER)|GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0008964(PANTHER)|GO:0015977(InterPro)
Cmu01g0556 1168 MobiDBLite consensus disorder prediction 450 493 - -
Cmu01g0556 1168 MobiDBLite consensus disorder prediction 459 493 - -
Cmu01g0556 1168 Gene3D Phosphoenolpyruvate/pyruvate domain 363 437 - -
Cmu01g0556 1168 Gene3D Phosphoenolpyruvate/pyruvate domain 486 617 - -
Cmu01g0556 1168 Hamap Phosphoenolpyruvate carboxylase [ppc]. 83 1123 IPR022805 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Cmu01g0556 1168 FunFam Phosphoenolpyruvate carboxylase 4 497 617 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0556 K01595 - - csv:101216256 1944.86
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0556 Cmu-Chr1:5952262 Cmu11g1752 Cmu-Chr11:29588601 6.30E-199 dispersed
Cmu01g0556 Cmu-Chr1:5952262 Cmu07g0325 Cmu-Chr7:3197019 1.30E-199 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g241 . Blo16g01045 . Bda11g01124 Bpe13g01321 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g02069 . . . . . Bda11g01124 . . . Bma06g00779 . . . . Cma15g01420 . Car15g01282 Cpe13g00027 . Bhi12g00828 . . . . . Lcy10g0852 Cla01g00567 Cam01g0590 Cec01g0582 Cco01g0606 Clacu01g0585 Cmu01g0556 Cre09g1951 Lsi09g00615 . Chy09g00939 Cme09g01467
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008238 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 3 1 35