Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0583 ATGGCTGTTTTTCCTATCAACTCATCCAACTTGGATCTCTCCATTTCCATGCCGGGCTTTGCTTCTTCATCGACTCGTCCTCCGCTAATGAGAGAATTGGACATGAACCGAGTACCGACGAGAGGAGAAGCAGAAGAAGAATGGGCGGTGGCACCGAGCGCGGAGGAAGAGGAAGAAGAAAGTTGCATTAATAATGGAGGTACTAAGCCAAGGAAGAAGCTTCGCCTGTCAAAAGATCAGTCTCGTCTTCTTGAAGAAAGCTTTAGGCTCAATCATACATTAAACCCTAAGCAAAAGGAAGCATTGGCCATGGAGTTGAAGCTGAAGCCAAGACAAGTTGAAGTTTGGTTTCAGAATCGTAGGGCCAGGAGCAAATTGAAGCAAACTGAGATGGAATGCGAGTATTTGAAGAGATGGTTTGGATCATTAACAGAGCAAAACCATCGGTTGCAGCGGGAACTGGAGGCGCTGAGAGCTATCAAGGTTGCTCCATCGGCCATCGTCTCATGCCACGACCGACAGCCGCCCCTCTCGACGTCTACTATAACCATGTGTCCCCGGTGTGAGCGTATAACATCTAGTAAGGCCGCAATCGCCGCCGCAACAAAGCCATCAAAGGTGGTTACATCCACCCTGAAATTGCATCAGCCGTCGCGAGCTTGTTGA 666 49.1 MAVFPINSSNLDLSISMPGFASSSTRPPLMRELDMNRVPTRGEAEEEWAVAPSAEEEEEESCINNGGTKPRKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNHRLQRELEALRAIKVAPSAIVSCHDRQPPLSTSTITMCPRCERITSSKAAIAAATKPSKVVTSTLKLHQPSRAC 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6315552 6318943 + CmPI595203_01g005830.1 Cmu01g0583 406089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0583 221 SMART halz 127 170 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu01g0583 221 FunFam Homeobox-leucine zipper protein 18 54 132 - -
Cmu01g0583 221 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 35 208 IPR050762 -
Cmu01g0583 221 Pfam Homeodomain 71 125 IPR001356 GO:0003677(InterPro)
Cmu01g0583 221 SUPERFAMILY Homeodomain-like 59 128 IPR009057 -
Cmu01g0583 221 ProSiteProfiles 'Homeobox' domain profile. 67 127 IPR001356 GO:0003677(InterPro)
Cmu01g0583 221 SMART HOX_1 69 131 IPR001356 GO:0003677(InterPro)
Cmu01g0583 221 Gene3D - 64 134 - -
Cmu01g0583 221 Pfam Homeobox associated leucine zipper 127 159 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu01g0583 221 CDD homeodomain 70 128 IPR001356 GO:0003677(InterPro)
Cmu01g0583 221 ProSitePatterns 'Homeobox' domain signature. 102 125 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cmu01g0583 221 Coils Coil 140 160 - -
Cmu01g0583 221 MobiDBLite consensus disorder prediction 39 72 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0583 Cmu-Chr1:6315552 Cmu07g0686 Cmu-Chr7:12646462 2.90E-57 dispersed
Cmu01g0583 Cmu-Chr1:6315552 Cmu09g0364 Cmu-Chr9:3512101 2.40E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5472 PF00046 Homeodomain 9.60E-17 CL0123 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0583 K09338 - csv:101206325 300.827