Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0588 ATGACCAAAGAGGAAGATTTTAAGCTACTAAAGTTTCAGACTTGTGATCTCAGAGTGAACATTCACTGTGATGGGTGTAGGCAGAAAGTCAAGAAACTTCTTCAGAGGATAGAAGGAGTGTTTCAGGTTGCCATAGGTGCAGAGAATCAAAAGGTTACCGTTTTAGGAAATGTGGATCCTGCAACTTTGATCAATAAGTTGGTGAGAGCTGGAAAACATGCTGAGCTTTGGTCACAGAAAGCAAACACGAGCCCGAAACCGAAGAACAAAGACGATAAGACTCCGAACAAGGAACCAAAGCATCTCAAACTGACCTCATTCAACTGTGAAGATGACGACATTGTTGATTGTGTTGAGGAAGGAGAAGATTATGAAGCTGCACAACTTCAGTTCAGAGCAGCTAATCTTGATCTCCTTAGGCAGCAAGCAATCGAAGCGAACAATGCTGGGAAAGGCATTGGGATCAACCGAATTCCCGGGCTAAATGGCAAGATGAACAACAACATCAACATCAACAACAAACCTGGGAATGGAAAGAAAATAGACCCTAATCAGCCAATGGCAATAAAAAACACCCCATCTGAGATTGACCGAAAAACTTTGGCAGCTCTGAAGATGAACAATGCTCAACTATTCGGTAACGGCCGAGAAAGTATCAATCTCGGGGAAGCAAAAAGAGCAAACAACAACGATTTGAGTTCAATGATGAGCATGGCAGGGTTCAACGGTGGCAACCTTTTGAATTTTGCCACTCCGTCTTCCATTGATGTCAATTCAACAAACACCTCTCAAGGACTTCACCTCCAACAGAACAATGGCTATGGCTATGGCTACCAGCCATCATCAACCTCTGGATTCTCCATGGCAACTGGTCAATATCATCAACAACAACAACAACAACAACAACAACAACAACCAACCTTCATCAATGGCTACAATCAATACCATCAGCAGCAACCATTGATGAACATGAACAACATGGTAAATAGACAAGCAATGAACCAGCAGCCTCAAATGATGTACAATAGAGCTCAATTGGTTCCACCAAACACAGGATATTACTTCAATTACAATCCAAGCCCTGTTCATCCAAGTTATCCTTATGTTCATGGCCACAATAGTAACTCTGCAGCTGAGATGTTCAGTGATGAGAACACAAGCAGCAGTTGCTCAATCATAAATCAGACTTTGATGTCTTGGTGTAAGGAAATGTCCCTTCATCTCACTTATCCACTCCCGATATTCCCTCGCCAGAATGGCCTCCGGACCAAATCTCAGCCATCGCCCCCGAAGTCGATCGTGTCCTGCTCCGCTCTCAAACGCTACACCGCTGGATGTAAAAGGCAGTATACGAGTGTGATGATAGTTCCGACTGGCGTAGGCGCAGCCATTGGTGGATACGCAGGCGACGCTCTCCCGGTTGCTCGTGCCCTCGCCTCCGTCGTTGATTGCCTTATTACTCACCCTAATGTGCTAAATGCAGCAATGCTTTACTGGCCGATGCATAATGTGCTTTATGTTGAAGGCTATGCACTAGATCGGTTTGCAGAAGGTTCATGGGCCCTAGAGCCTGTTCACCAGAATCGGGTAGGATTGGTTCTTGATGCTGGAATGGAGGAAGAGCTTCGAATTCGTCACTTGCAAGTGGCTGATGCTGCTAGAGCTTCTCTTGGATTGCCCGTGATGGAATATGTTGTCACAGATACACCTCTAATGGTAGAGAAGTGGATTGATCCAAAAACTGGGCAATCAACTGGGAGGATAAGACATCCTGCCTCACTGCTTAGAGCCGTGCAGACATTAATGAACCGGTCGAAGGTGAATGCGGTTGCAGTTGTTGGACGATTCCCAGACGACGATGATGAAGAGACAGACAATTATCGACAAGGGATGGGAGTTGATACTTTGGCAGGGGTTGAGGCTATTATTAGCCATCTTGTGGTGAAGGAGTTTCAGATTCCATGTGCTCATGCTCCTGCTTTGTCACCTACTCCCTTATGCACATCTCTATCTCCAAAATCAGCAGCAGAGGAGTTAGGATTCACATTCTTACCATGTGTACTTTCTGGGCTAAGTAATGCGCCTCAATACTTGAGCAAGAATTCTCAATCATTGGGGAAGGACTGCATATTGGCAGATGATGTTGATAGTGTCATTGTACCTATAAATGCATGTGGAGGGGATGGCACTCTTGCTTTTGCCAGAAGCAAACAGTTCAAGCCACTTATTATTGCGGTCGAGGAAAATGAAACAGTTCTCAGCGATTCTCCAGAGTCACTTGGGATTGAGGCGGTAAAAGTCTCAAATTATTGGGAAGCCATAGGTGTTGTTGCAGCTCACAAGGCAGGAATAGATCCTTATTCCCTTCGAAGAAATAGGATCAACAACATTAATTGCATTTCCAGTACATCTCCTAATGGCCACGCAGTCTCAAGTGCCCCCCCGACAATTCAACTGAGCTTGGATTTTGAACTTGATCAGCTATCTGCAGGATCTGTTGAATTCACCTACAAAAGTTGTTTATACATATTCAACACCTATTTACCAGGGAGGTCGATCGCCGGCGCCGGAGACGTCATGAAGAAAGACTGCACCGATCTCATTCGTCGGATCGCTCTCCTGATTCATCTGGCGGAGGAGATCACAAACTTCTGCAGCGGAAGCAGGGAGAATTTTGAGGCATTGAATGATGATGGGTCTTCTTGTTCGTCTTCTTGGTTGGATTGCCTTTCGGAAGTGGTCGGAGCAATTCAGGCGGCGAAGCGGCTTCTGTACACGGCTTTGACTTTCTCTGTGTGCGACGAGGAGGGCTGTGCGACTTCAACGGAGGGAGCTACTAAAAAATTGGTTCTACAATTCCAATACGTGACAACAAGATTGGAAACTGCACTCTCAAATCTGCCATACGAACACTTTTGTGTCTCAGATGAAGTACAAGAACAGGTTGATTTGGTTAGAGCTCAACTGAGGAGAGCATCAAACAAGTACGAATCTATGTCTAACCCTAAAGAAAAGAAGCTTCAAGCTAGGTCAGGTTCTGTAAAATGGATGATCAGTAATGATGTCAAGAGCATGTCTAGTGTTGATGATGGAGATGTCGAGTCTCAGCATCATCGTCCTCGGAACCGCGACCACTTGACTAGTTTCGATTCGTTGAATTCTTGCTTTGATGATTGTTCAAGTGTTGTTCATTCTGATATGGAAGATGTTATAGCAAGCAAGAGCCAAGATGAGGTTAAAAAGCCTGTTGAAATTGAAATTCCTGAAAACTTCCTATGCCCCATTTCCTTTGAGTTGATGTTGAATCCCGTCATTGTCTCTACGGGACAGACATATGAAAGATCCAACATACAGAATTGGATAGACAGAGGAAATAGAATATGTCCAAAAACTCAAGAGCAGCTCCAATCTCTGATCCTCACTCCAAATTTTGTTATGAGAAAATTGATCTCTGAATGGTGTGAAGAGCATAATGTGAAGCTAGAGGAAGGATTAACCAACAGGAAACTTAAGAAGTATAGATCATTTGAGGACGATTGCCAAAGGACTGTGTCGATCAAAACTCTGGTTCGACACCTTTCATTCGGGTCGATTCAGGAGCAGAAGATCGCCGTGACCGAGATTCGAAAGCTATCAAAAAGTAGCTCAGATCATAGAGTTGAAATAGCAGAAGCAGGAGCAATCCCACAACTGGTTAACCTTTTAACTTCAAAGGATGTTGCAACACAAGAGAATGCAATTTCTTGCATTCTCAACCTTTCACTTCAAGAGCAAAACAAAAGACTTATTATGCTTTCTGGTGCTGTTTCTTACATTTCGCAAGTCCTCAAAGTTGGGAGCATGGAAGGGAGAGAGTGTGCCGCTGCAACAATTTACAGCTTGTCATTAGCCGATGAGAACAAGGCGATAATTGGGGCTTCCGGAGTGATCTCGGACCTGTTAGAAATCCTCGAGATCGGTAGTCCGAGAGGGCAAAAAGATGCTGCAGGAGCTCTATTGAATTTGTGTATGCACCAAGGGAATAAGGGCAGGGCTTTGAAGGTTGGGATTGTCAAACCATTGTTGAAAATGCTCTCTGATTCAAATGGTTCTTTGGTTGATGATGCTCTCTATATAATGTCGGTACTTTGCGGCCATCCAGAGGCGAAGGCTACGATGTCGAATGCGAATTCACTACTTGTTTTGACTGACATTCTGAAGACGGGGTCGCCTCGCAGCAAGGAAAATGCAGCTGCTGTTCTGCTTGCATTATGCAAGGGAGATTGGGAGAAGCTGGAATGGTTAACCAGACTTGGCGTGGTGGTGTCGTTGATGAAACTTGCCAATAATGGCACGGCGAGAGCGAGGCGAAAGGCTGCTTTATTGTTGGACCAACTCGGAAAATCATGA 4389 44.7 MTKEEDFKLLKFQTCDLRVNIHCDGCRQKVKKLLQRIEGVFQVAIGAENQKVTVLGNVDPATLINKLVRAGKHAELWSQKANTSPKPKNKDDKTPNKEPKHLKLTSFNCEDDDIVDCVEEGEDYEAAQLQFRAANLDLLRQQAIEANNAGKGIGINRIPGLNGKMNNNININNKPGNGKKIDPNQPMAIKNTPSEIDRKTLAALKMNNAQLFGNGRESINLGEAKRANNNDLSSMMSMAGFNGGNLLNFATPSSIDVNSTNTSQGLHLQQNNGYGYGYQPSSTSGFSMATGQYHQQQQQQQQQQQPTFINGYNQYHQQQPLMNMNNMVNRQAMNQQPQMMYNRAQLVPPNTGYYFNYNPSPVHPSYPYVHGHNSNSAAEMFSDENTSSSCSIINQTLMSWCKEMSLHLTYPLPIFPRQNGLRTKSQPSPPKSIVSCSALKRYTAGCKRQYTSVMIVPTGVGAAIGGYAGDALPVARALASVVDCLITHPNVLNAAMLYWPMHNVLYVEGYALDRFAEGSWALEPVHQNRVGLVLDAGMEEELRIRHLQVADAARASLGLPVMEYVVTDTPLMVEKWIDPKTGQSTGRIRHPASLLRAVQTLMNRSKVNAVAVVGRFPDDDDEETDNYRQGMGVDTLAGVEAIISHLVVKEFQIPCAHAPALSPTPLCTSLSPKSAAEELGFTFLPCVLSGLSNAPQYLSKNSQSLGKDCILADDVDSVIVPINACGGDGTLAFARSKQFKPLIIAVEENETVLSDSPESLGIEAVKVSNYWEAIGVVAAHKAGIDPYSLRRNRINNINCISSTSPNGHAVSSAPPTIQLSLDFELDQLSAGSVEFTYKSCLYIFNTYLPGRSIAGAGDVMKKDCTDLIRRIALLIHLAEEITNFCSGSRENFEALNDDGSSCSSSWLDCLSEVVGAIQAAKRLLYTALTFSVCDEEGCATSTEGATKKLVLQFQYVTTRLETALSNLPYEHFCVSDEVQEQVDLVRAQLRRASNKYESMSNPKEKKLQARSGSVKWMISNDVKSMSSVDDGDVESQHHRPRNRDHLTSFDSLNSCFDDCSSVVHSDMEDVIASKSQDEVKKPVEIEIPENFLCPISFELMLNPVIVSTGQTYERSNIQNWIDRGNRICPKTQEQLQSLILTPNFVMRKLISEWCEEHNVKLEEGLTNRKLKKYRSFEDDCQRTVSIKTLVRHLSFGSIQEQKIAVTEIRKLSKSSSDHRVEIAEAGAIPQLVNLLTSKDVATQENAISCILNLSLQEQNKRLIMLSGAVSYISQVLKVGSMEGRECAAATIYSLSLADENKAIIGASGVISDLLEILEIGSPRGQKDAAGALLNLCMHQGNKGRALKVGIVKPLLKMLSDSNGSLVDDALYIMSVLCGHPEAKATMSNANSLLVLTDILKTGSPRSKENAAAVLLALCKGDWEKLEWLTRLGVVVSLMKLANNGTARARRKAALLLDQLGKS 1462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6415191 6429418 - CmPI595203_01g005880.1 Cmu01g0588 406094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0588 1462 MobiDBLite consensus disorder prediction 1025 1044 - -
Cmu01g0588 1462 Pfam Armadillo/beta-catenin-like repeat 1215 1254 IPR000225 GO:0005515(InterPro)
Cmu01g0588 1462 Coils Coil 975 995 - -
Cmu01g0588 1462 MobiDBLite consensus disorder prediction 75 101 - -
Cmu01g0588 1462 ProSiteProfiles Heavy-metal-associated domain profile. 12 75 IPR006121 GO:0046872(InterPro)
Cmu01g0588 1462 Pfam Protein of unknown function (DUF3326) 451 790 IPR021763 -
Cmu01g0588 1462 ProSiteProfiles U-box domain profile. 1086 1160 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu01g0588 1462 CDD HMA 16 75 IPR006121 GO:0046872(InterPro)
Cmu01g0588 1462 SUPERFAMILY RING/U-box 1082 1160 - -
Cmu01g0588 1462 CDD RING-Ubox_PUB 1088 1140 IPR045210 -
Cmu01g0588 1462 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1086 1162 IPR013083 -
Cmu01g0588 1462 Pfam Heavy-metal-associated domain 17 73 IPR006121 GO:0046872(InterPro)
Cmu01g0588 1462 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1226 1268 IPR000225 GO:0005515(InterPro)
Cmu01g0588 1462 MobiDBLite consensus disorder prediction 85 101 - -
Cmu01g0588 1462 PANTHER OS01G0127400 PROTEIN 422 812 IPR021763 -
Cmu01g0588 1462 SUPERFAMILY HMA, heavy metal-associated domain 14 78 IPR036163 GO:0046872(InterPro)
Cmu01g0588 1462 SMART arm_5 1338 1378 IPR000225 GO:0005515(InterPro)
Cmu01g0588 1462 SMART arm_5 1297 1337 IPR000225 GO:0005515(InterPro)
Cmu01g0588 1462 SMART arm_5 1215 1255 IPR000225 GO:0005515(InterPro)
Cmu01g0588 1462 SMART arm_5 1379 1419 IPR000225 GO:0005515(InterPro)
Cmu01g0588 1462 SMART arm_5 1256 1296 IPR000225 GO:0005515(InterPro)
Cmu01g0588 1462 Gene3D - 1303 1461 IPR011989 -
Cmu01g0588 1462 Gene3D - 1183 1302 IPR011989 -
Cmu01g0588 1462 SUPERFAMILY ARM repeat 1185 1459 IPR016024 -
Cmu01g0588 1462 Gene3D - 12 83 - -
Cmu01g0588 1462 MobiDBLite consensus disorder prediction 1027 1044 - -
Cmu01g0588 1462 Pfam U-box domain 1087 1158 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu01g0588 1462 SMART Ubox_2 1090 1153 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0588 Cmu-Chr1:6415191 Cmu05g2175 Cmu-Chr5:31213570 1.20E-53 dispersed
Cmu07g0660 Cmu-Chr7:10848268 Cmu01g0588 Cmu-Chr1:6415191 6.60E-97 transposed
Cmu09g0643 Cmu-Chr9:5962410 Cmu01g0588 Cmu-Chr1:6415191 6.60E-07 transposed
Cmu01g0588 Cmu-Chr1:6415191 Cmu05g2395 Cmu-Chr5:33169770 1.40E-06 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0588 - - - 0.0