Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0605 ATGGAACACTTTTTGGGTCTTCTCCGAATTCGGGTGCTGCGCGGTGTTAATCTCGCTATTCGTGATTCTCGTAGCAGCGATCCTTATGTCGTCGTCACAATGGGTGAGCAGAGGTTGAAGACCCGGGTGGTGAAAAATAATTGCAACCCTGAATGGAACGATGAGTTGACTCTTTCAATTGCAGATCTCAGGACTCCAATCGGTATATCAGTGTATGACAAAGACACACTAACAGACCATGACAAAATGGGAGATGCCGAGATCGACATCGAACCATACATCGAATGTTTGACAATGGGACTGGAGAGCCTCCCAGATGGGTGTGTGGTTAAGAGAGTATATCCAAAAAGAACAAACAATTTAGCTGATGAGAGCCAATGTGTTTGGCACAAGGGGAAAATTGTACAGAACATGTTCCTGAGGTTGAAGAACGTGGAGTGTGGTGAGGTAGCAATTCAGCTCGAATGGATCGACGTTCCTGGTGCTAAGGGTTTGCCAGTCGGGGGTACAAGCAACTTCTGA 522 46.55 MEHFLGLLRIRVLRGVNLAIRDSRSSDPYVVVTMGEQRLKTRVVKNNCNPEWNDELTLSIADLRTPIGISVYDKDTLTDHDKMGDAEIDIEPYIECLTMGLESLPDGCVVKRVYPKRTNNLADESQCVWHKGKIVQNMFLRLKNVECGEVAIQLEWIDVPGAKGLPVGGTSNF 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6610995 6612878 + CmPI595203_01g006050.1 Cmu01g0605 406111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0605 173 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 158 IPR035892 -
Cmu01g0605 173 Pfam C2 domain 6 92 IPR000008 -
Cmu01g0605 173 SMART C2_3c 7 102 IPR000008 -
Cmu01g0605 173 Gene3D C2 domain 5 164 IPR035892 -
Cmu01g0605 173 ProSiteProfiles C2 domain profile. 1 106 IPR000008 -
Cmu01g0605 173 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 1 163 IPR044562 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0605 Cmu-Chr1:6610995 Cmu07g0642 Cmu-Chr7:9786660 7.20E-59 dispersed
Cmu01g0605 Cmu-Chr1:6610995 Cmu04g1098 Cmu-Chr4:25582353 3.30E-56 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0605 - - - 0.0