Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0608 ATGCCTCGAAGGCCAACAAAGCGGCGCCGGCTGCTGGGAACTCCTCGACCTTTAACTTTTTCCTCATTTGCTCGAACTTCTTGTATGGTGAGGAATCAACATTTGAAGTCGAAAGTAATGGAATCTCACCCTAAACATGAAGGTAATGGTTTTATTAGGAATAGTCCTGAGCCTCAGAGTGAATCATCTGACTCTTCTTCCAGTGGTGAACAGTTTGAAGAAGTTCAAGCAGACTTTGCCTTTTTTGATCCAAAACCTGATGATTTTCATGGGGTGAAGACATTGCTGCAGAACTACCTAGATGACACACAGTGGGATATCAGTGGATTTTCTGATTTAATATTGGGACAAACCACAGTTGGCAGTGTTGTCAAAGTAGAGGGGGATGAAGATAATGGAGTATTCTCTTTTATCACAGCCCTTAACTTGGAAAGATATAAGGACAGTAGATCTATACTGGAGCTCAAGGGGTATCTCTCCAAAGTTTGCCAGGACAACAATATAAAGAATGACTTGAAACAACTTCTGGAGGAGCAAGCATCCAGTGTAGGTCTCATCGTTTCTCAGAGAATTGTGAATCTTCCACCGCAACTTCTGCCACCACTTTATGATGCCCTTTTTGATGAAATCTCTTGGGCTATTGAGGATGAGCCAACTAAAGAGCTCCAGGATTCCTTCCGCTTCAAATTGTATATTTTAGTCAGTAAAATTTACAAGCTCAAGACTACAAATCATAAGAAAAAACCAACTCCTGAAACAGAAGAACCAATTATCTATGTTAAGGCAGAAGATGAAATATTTCACAAGTTGTGCTTATGGTCCTTCTGCTTTCCCTTGCACATCCAACCACAGACAACTAACGAGCTAAAAGGTTACCAGTTAATGGGAATAGTAATGGCTGTTGAAGCAAGCAAAGTTCCCGCATTTCGAGATGAGTTGAAATCTTTAATAATGAACTCCATTGGTTTTTCTCTCTATAATCCTCCGCTTGCCTTCGATCTTTCTTCTTCTTCCCATGATTTCTTCCCCAAAATGTTGGCCTCTGCAATTTCAATACCCACCAATTTCAACTTCCCCCTTTCCTATTCTCAACGCACACTCTCAATCATTCACATGAAGCTTTTTGCAGTTGGCGCCATGGGAATTTCTAAACCCACAGATCATTCGCTCTTTCTCTATCGTCCTCTTTTCTCTTCAGAATCTCTCTCGAAACGCGTTGTTTGCAGGCGTGTTAGCAGTGACGGTGGTGGTGCTGTTGATTCTACACAGCAGCAGTCTGCAGCTCCTGGCATCAAAGATGTACAGAATGATTCTTCTAGTGTTGGAGACAGTTATGTGGCATTATTTGTCCGGATGCTCGGCTTGGATCATGATCCTCTCGATAGAGAACAAGCAACCATAGCTTTATGGAAATATTCCCTTGGAGGGAAGAAGCACATAGATGCCATCATGCAGTTTCCTGGATGCATAAATCTGACAGTAAATCTTCTTAGGTCAGAGTCAATCTCTACGTGTGAAGCAGCTGCTGGCCTTCTACGGTCAATTTCTCTGGTGAACTTATACCGAGATTCAGTTGCAGAAAGTGGAGCAATTGAAGAGATAACTGGCTTGCTTACTCAGCCGTCCTTGACTCCCGAGGTGAAGGAGCAAAGCATCTGTGTTTTGTGGAATTTGTCAGTAGATGAAAAACTCAGAACTAAGATTGCAAACACTGATATTCTGCCATTGCTTAGTAAGAATCTTGATGATGAGGACATGAAGGTGAAAGAAGCAGCTGGAGGGGTTATAGCAAATCTGGCTTTGAGCCCATGTAACCATGGGGTTATTGTCGAATCAGGCTTAATTCCTAAACTGGCGTATCAGTTGAAAGCTGAGGCAGACAGCTCAAAAATTTTGAGAAAGGAAGCAAGAAATGCATTGCTTGAACTTTCTAAAGATGAATATTATAGAATTCTTGTCATAGAGGAAGGACTGGTTCCAGTACCAATTCTTGGTGCTGCTGCCTATAAATCCTTCAGACCAGGCCTGCATTCATGGCCCAGTTTGCCTGATGGCACAGAAATTGAACAATCTTCCAAAGAACCTTCAAGATTTGGTGCCTCTGAATTACTCCTTGGGTTAAATGTTGACAATAATGCAAACATAGAAGAAGGCAAGATAAATGCAATTGTTGGACGGACACAGCAACAGTTTCTGGCTCGAATAGGTGCCATAGAACTTGAAGATCTGAAGGACTCTCGATCTGAATCATCTACCAGTAACCATCTTACACTCTTACCTTGGATAGATGGTGTGGCTCGACTAGTTTTAATCCTTGAACTTGAGGATGTTAATGCCGTAGTGAGAGCTGCAGAGTCAATCGCTGATGCATGTATCGATGAACACATGCGTATTTCATTCAAGGAAGCTGGAGCAATCAAACATTTAGTCAAGTTTTTAGATTATATGAATAATTCTGTCAAATGGGCTACAGTTCAAGCTCTAGAGAGACTATCGATTAGCAATGTTGTTTGCCAGGCAATTGAAAATGAAGGTGCACTTGGTCCTTTGCTCAGTATTTTAAAGCTCTCAAGTATCCCTGAAAATGTGATGGAGAAGACCCTCGATATACTTTCTCGGATCTTGGACCCTAGTAAAGAAATGAAATCAAAGTTTTACAGTGGACCGGTAAATGGGTCTCAAGGAGGACAACATTCAGAAAGCAATTTTGAAGCTTCTACCAGGAAAGATGTGCTGGATGTTGATGTTGTTTCTCGCCTAGTTGAGATTTTGAACTCCTCATCCCCAAACTTGAAACGGAAAGCTGCTTCTATCCTGGAATTTGTTTCTATTATGGACCCAAGCATGGAAATAATCGATTCCATGGAGATAGAGTCTGGATTGTCGGCTGTTTTCCAGCTTGGAGTTTCAATAGATTCTGATGCTGAAGATTGGCAGCCTGAAAGATATGCCCTTGAAGTTGAGGAAGCTGGTCTTGCAATTTCAGCAGCCTCCCGACTATTAACAAAGCTTCTAGATTCTGAAAAGTTCTGCAACAAAATAAACTCCACCCATTTCACTAAGTTGCTTCGTCGAATCCTGAAGTCGGACATTCCCATTAACCACAAAGATTGGATTGCTGCTTGCCTAATCAAAGTCAGCTCCATTTCAGCTCTGAACACGGACTCCGGAGATCCTATCAACATGGAGGTCACTCTGTACGAAACTATACCGAGACTTATTCAACAGATCAAAAGCTCCTTCTCCCTGGAAGTTCAGGAATCTGCTGTTGTGGAGCTGAACAGAATAGTCTCAGAGGGCATAGTCGATGCTACCCGAGCTGTTGCTTCAAAAGGCGGTATCTTTCCATTGGTAAAGCTGATCAATGAAGGAAGTGAGAGGGCAACAGAAGCAGCCTTAGCCATACTGTATAATCTGAGCATGGATACTGAAAATCATCCAGCAATTATAGCTGCGGGAGCTGTGCCAGCATTGAAGAAAATTGTTCTATCGCAACGAGCGCAGTGGCGACAAGCTCTTTATTTGTTGAGGACGTTGCCTACATGA 3546 42.27 MPRRPTKRRRLLGTPRPLTFSSFARTSCMVRNQHLKSKVMESHPKHEGNGFIRNSPEPQSESSDSSSSGEQFEEVQADFAFFDPKPDDFHGVKTLLQNYLDDTQWDISGFSDLILGQTTVGSVVKVEGDEDNGVFSFITALNLERYKDSRSILELKGYLSKVCQDNNIKNDLKQLLEEQASSVGLIVSQRIVNLPPQLLPPLYDALFDEISWAIEDEPTKELQDSFRFKLYILVSKIYKLKTTNHKKKPTPETEEPIIYVKAEDEIFHKLCLWSFCFPLHIQPQTTNELKGYQLMGIVMAVEASKVPAFRDELKSLIMNSIGFSLYNPPLAFDLSSSSHDFFPKMLASAISIPTNFNFPLSYSQRTLSIIHMKLFAVGAMGISKPTDHSLFLYRPLFSSESLSKRVVCRRVSSDGGGAVDSTQQQSAAPGIKDVQNDSSSVGDSYVALFVRMLGLDHDPLDREQATIALWKYSLGGKKHIDAIMQFPGCINLTVNLLRSESISTCEAAAGLLRSISLVNLYRDSVAESGAIEEITGLLTQPSLTPEVKEQSICVLWNLSVDEKLRTKIANTDILPLLSKNLDDEDMKVKEAAGGVIANLALSPCNHGVIVESGLIPKLAYQLKAEADSSKILRKEARNALLELSKDEYYRILVIEEGLVPVPILGAAAYKSFRPGLHSWPSLPDGTEIEQSSKEPSRFGASELLLGLNVDNNANIEEGKINAIVGRTQQQFLARIGAIELEDLKDSRSESSTSNHLTLLPWIDGVARLVLILELEDVNAVVRAAESIADACIDEHMRISFKEAGAIKHLVKFLDYMNNSVKWATVQALERLSISNVVCQAIENEGALGPLLSILKLSSIPENVMEKTLDILSRILDPSKEMKSKFYSGPVNGSQGGQHSESNFEASTRKDVLDVDVVSRLVEILNSSSPNLKRKAASILEFVSIMDPSMEIIDSMEIESGLSAVFQLGVSIDSDAEDWQPERYALEVEEAGLAISAASRLLTKLLDSEKFCNKINSTHFTKLLRRILKSDIPINHKDWIAACLIKVSSISALNTDSGDPINMEVTLYETIPRLIQQIKSSFSLEVQESAVVELNRIVSEGIVDATRAVASKGGIFPLVKLINEGSERATEAALAILYNLSMDTENHPAIIAAGAVPALKKIVLSQRAQWRQALYLLRTLPT 1181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6666605 6677244 + CmPI595203_01g006080.1 Cmu01g0608 406114

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0608 1181 Gene3D - 984 1179 IPR011989 -
Cmu01g0608 1181 Gene3D - 740 968 IPR011989 -
Cmu01g0608 1181 SUPERFAMILY ARM repeat 775 1170 IPR016024 -
Cmu01g0608 1181 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1112 1154 IPR000225 GO:0005515(InterPro)
Cmu01g0608 1181 Pfam BCCIP 74 267 IPR025602 -
Cmu01g0608 1181 SMART arm_5 793 833 IPR000225 GO:0005515(InterPro)
Cmu01g0608 1181 SMART arm_5 602 645 IPR000225 GO:0005515(InterPro)
Cmu01g0608 1181 SMART arm_5 477 517 IPR000225 GO:0005515(InterPro)
Cmu01g0608 1181 SMART arm_5 561 601 IPR000225 GO:0005515(InterPro)
Cmu01g0608 1181 SMART arm_5 904 944 IPR000225 GO:0005515(InterPro)
Cmu01g0608 1181 SMART arm_5 518 560 IPR000225 GO:0005515(InterPro)
Cmu01g0608 1181 SMART arm_5 1056 1098 IPR000225 GO:0005515(InterPro)
Cmu01g0608 1181 SMART arm_5 1142 1181 IPR000225 GO:0005515(InterPro)
Cmu01g0608 1181 SMART arm_5 1101 1141 IPR000225 GO:0005515(InterPro)
Cmu01g0608 1181 SMART arm_5 834 876 IPR000225 GO:0005515(InterPro)
Cmu01g0608 1181 MobiDBLite consensus disorder prediction 416 437 - -
Cmu01g0608 1181 SUPERFAMILY ARM repeat 445 873 IPR016024 -
Cmu01g0608 1181 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 529 573 IPR000225 GO:0005515(InterPro)
Cmu01g0608 1181 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 400 1181 - -
Cmu01g0608 1181 MobiDBLite consensus disorder prediction 53 69 - -
Cmu01g0608 1181 Gene3D - 432 667 IPR011989 -
Cmu01g0608 1181 MobiDBLite consensus disorder prediction 36 69 - -
Cmu01g0608 1181 MobiDBLite consensus disorder prediction 36 50 - -
Cmu01g0608 1181 MobiDBLite consensus disorder prediction 415 437 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0608 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g458 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g02014 . . . . . . . . . . . . Cmo15g00939 . Cma15g00902 . Car15g00841 Cpe13g00362 . Bhi12g00918 . . . Hepe02g2639 . . Cla01g00619 Cam01g0647 Cec01g0639 Cco01g0665 Clacu01g0635 Cmu01g0608 Cre09g1893 Lsi09g00669 . Chy09g00841 Cme09g01373
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011868 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 30