Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0613 ATGTCTTGCTCCCAAACCCCTTATCCAGACCTCTGCTTCCATTACATAAACTCGAACAACCACGCATCGACTGCCGGTATTGGTGAAACTTCTCTCATCGTCACTGATCACTTTCAAAACTCAGCCATTCGATCCACTTTGAACCAAGCCATGATTGTCCATGACCATCTTCGCTCCGCCATGGTTCTTGATTCATTTGATGACGACGACAGAACTAAATTCGCTTTAATCGATTGTTTGGAACTCTATGAGGATTCGATCGCCGAGCTCAATCATTCGGCAATCAGTTTCATGAATATCAATTCGATTGACCACTTGACGTTGTTAAGTGCTTCATTAGCGAACCATCAAACATGTCAAGATGGATTTCGAGATTTTGGATTTTCGTCTGATGATTTGAATAATTTCTTTTTTCCATTTCAAATTTTGAGTAACTTCTCAAAATTGGTTAGCAATTCTCTTGCCATCACGAAGGCCGCCACGGCAGCCGCCGCCACTAGTTCCTCCAACTCCGGTGGCCGACGGTTGTTAGGTGGCTCGTTTCCCAAGTGGGTTTACAATGATGATAGGATGCTCCTTCAGGGCGTGGTCGGGAATCGCGCAGATATGGTGGTCGCCCAAGATGGAAGCGGCAATTTTAGGACGATATCGGAGGCGGTGGCCGCGGCGGAGGAGGCGAGGAAGGGAAGTGGAAGGTTTGTTATATATGTAAAAGGTGGGATTTACAAAGAGAATGTTGTGATTAAGAAGAGGATGAAGAATATAATGATGATTGGAGACGGGATTGATAGGACGACCGTCACGGCCATGAAGAACGTCCAAGATGGATCAACTACTTTCCGATCAGCCACTTTTGCGGTGGCCGGCGAAGGATTCATCGCCAAAGACATGACGTTCGAGAACACGGCGGGGCCAGAGAAACACCAAGCTGTCGCACTCCGATCTAATGCTGATCGCTCACTTTTCTACCGATGCAGCTTCAAAGGCTACCAAGACACTTTGTACGCCCACTCCAACCGCCAGTTCTATCGTGAATGCCACATTTACGGAACTGTCGACTTCATTTTCGGCGACGGCATTGCTGTTTTTCAAAACTGCAACATCTTTGTCAGAAAGCCGATGATGCACCAAAAAAATACCATCACGGCGCAGGCGAGGTCGGACCCAAATGAGAACACCGGGTTCGTGATCCACAATTCCGTCATCGGAGCAGCGCCGGACTTGAAGCCGGTGGAGGGTATGTACGGAACTTATTTGGGGAGGCCATGGAAGGTGTATTCGAGGACAGTGATAATGAAGAGTTTTTTGGATGGTCTGATTGAACCGGCCGGGTGGCTTCCTTGGGCCGGAGATTTCGGTCTGAGGACGGTTTATTATGGCGAGTTTATGAACGCTGGTGGTGGAGCAAATACGAAAGGGAGGGTGCGGTGGCCGGGATACCATGTGATGACGAGTGCGGCGGAGGCTGAGAGGTTCACGGTGGAGAATTTCTTGGAAGGAGGAGGTTGGATTCCGGCCACCGGAGTGCCATTCGCAAATGGGCTATGA 1548 49.03 MSCSQTPYPDLCFHYINSNNHASTAGIGETSLIVTDHFQNSAIRSTLNQAMIVHDHLRSAMVLDSFDDDDRTKFALIDCLELYEDSIAELNHSAISFMNINSIDHLTLLSASLANHQTCQDGFRDFGFSSDDLNNFFFPFQILSNFSKLVSNSLAITKAATAAAATSSSNSGGRRLLGGSFPKWVYNDDRMLLQGVVGNRADMVVAQDGSGNFRTISEAVAAAEEARKGSGRFVIYVKGGIYKENVVIKKRMKNIMMIGDGIDRTTVTAMKNVQDGSTTFRSATFAVAGEGFIAKDMTFENTAGPEKHQAVALRSNADRSLFYRCSFKGYQDTLYAHSNRQFYRECHIYGTVDFIFGDGIAVFQNCNIFVRKPMMHQKNTITAQARSDPNENTGFVIHNSVIGAAPDLKPVEGMYGTYLGRPWKVYSRTVIMKSFLDGLIEPAGWLPWAGDFGLRTVYYGEFMNAGGGANTKGRVRWPGYHVMTSAAEAERFTVENFLEGGGWIPATGVPFANGL 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6776884 6779220 - CmPI595203_01g006130.1 Cmu01g0613 406119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0613 515 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 160 IPR035513 -
Cmu01g0613 515 NCBIfam pectinesterase inhibitor domain 2 158 IPR006501 GO:0004857(InterPro)
Cmu01g0613 515 CDD PMEI-like_3 2 154 - -
Cmu01g0613 515 SMART PMEI_2 1 156 IPR006501 GO:0004857(InterPro)
Cmu01g0613 515 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 2 158 IPR035513 -
Cmu01g0613 515 Pfam Pectinesterase 202 500 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cmu01g0613 515 ProSitePatterns Pectinesterase signature 2. 348 357 IPR033131 -
Cmu01g0613 515 Gene3D - 198 515 IPR012334 -
Cmu01g0613 515 PANTHER PECTINESTERASE 2 506 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cmu01g0613 515 FunFam Pectinesterase 197 515 - -
Cmu01g0613 515 SUPERFAMILY Pectin lyase-like 200 513 IPR011050 -
Cmu01g0613 515 ProSitePatterns Pectinesterase signature 1. 229 248 IPR018040 -
Cmu01g0613 515 Pfam Plant invertase/pectin methylesterase inhibitor 2 156 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0613 Cmu-Chr1:6776884 Cmu05g0821 Cmu-Chr5:7424347 7.90E-130 dispersed
Cmu09g1975 Cmu-Chr9:35824746 Cmu01g0613 Cmu-Chr1:6776884 3.80E-72 transposed
Cmu01g0613 Cmu-Chr1:6776884 Cmu05g2264 Cmu-Chr5:32037136 4.80E-103 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0613 - - - 0.0