Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0621 ATGGGAGACGTGAAGGACAAGGTCAAGGGTTTCATGAAAAGGTTTAATAATACGCTGTCCTCATCTTCTTCTTCGTCAAGTTTCAAGGGCCAGGGAAGAGTTTTAGGATCGTCTTCTTCTGGGTCGACTAGTTCTATGCCTACCCGCCCATCGCGGAATCCCATTTCAAAGCCGAACCCGGTTAATCCACCTTCAGATTCTAAGCCCCCGCTTGTGAATTCGATTGCCAATGGTCAAAACAGGTCAGACCTGTCGAATAAATCGAACCCAGATCGTAAACCGGCCGATGGATTTGACCCATTTGACTCGTTTATAACATCTGGGAAAAGATCTGGAAATGGGTATTCCTTAAATGTGTTTGAATGTCCGATTTGTGGCCAAAGTTACAGGTCTGAAGAAGAGGTTTCGGTGCACGCAGATAGCTGTGTCAACGATAGTACAGCCAAGGGAGCTGAAGATCCACCTACAAGTGATGCAGAATCTCGGAGTGAATTGGAGGCTTGTGTTGCCACTTTCTTATCCGGGAAGCCATCACAAGGTTCATTGGATATTGTTCTGAAGCTTTTGAGGAACATAGTTCGGGAACCAGAGAATTCAAAGTTTAGGAAAATTCGTCTGAGTAATCCCAAAATTAAGGAGGCAATTGGTGAGGCTGTGGGGGGAGTGGAATTGTTGGAGTTTGTAGGTTTTAAATTGCAAGAGGAAGATGGTGAAATGTGGGCAATCATGGACGTTCCAACAGAGGAAGAAATTAACCTATTAAGTAAGGTAATAGATTCGATTGACCGGCCAAAGCTTGATGAACAGCAAAAGAAAGCCAGCACTGCATCTGCACTGATTGAACCAAAGAAGGTAGACAGACAGATTCGGGTATTCTTTGCTGTCCCTGAAAACGTTGCAGCCAACATTGAACTACCAGACTCCTTCTACAAACTCTCTGTTGAAGAGGTTAAAAGAGAAGCTATAATGAGGAAGCAAAAGATTGCTGAATCTCAGCTTTTGGTTCCCAAATCATACAAGGAAAAACAGGCAAAAGCTGCTAGGAGGAAGTACACAAGAACAGTTATCAGAATTCAATTTCCCGACGGCGTGGTACTTCAAGGTGTTTTTTCTCCTTGGGAACCGACAATTGCGCTATATGAGTTTGTGAGCACAGCACTGAAAGAACCCGGCTTGGAATTCGAGTTGATACATCCTGTCGGTGTTAAGCGGCGTACAATCACTCATTTTCCCGCAGAAGGAGAGAGATCTAAAACACTAGATGATGAGGAGTTAGTTCCTTCAGCTCTGGTCAAGTTTAGACCAATTGAAACAGATTCAGTTGTCTTCACAGGTTTGCGTAACGAACTCCTTGAGATAATCGAACCACTCGTTAGCGGTTCAGCCGTGGCTCCTCCTGCACAAGTTTAA 1410 44.33 MGDVKDKVKGFMKRFNNTLSSSSSSSSFKGQGRVLGSSSSGSTSSMPTRPSRNPISKPNPVNPPSDSKPPLVNSIANGQNRSDLSNKSNPDRKPADGFDPFDSFITSGKRSGNGYSLNVFECPICGQSYRSEEEVSVHADSCVNDSTAKGAEDPPTSDAESRSELEACVATFLSGKPSQGSLDIVLKLLRNIVREPENSKFRKIRLSNPKIKEAIGEAVGGVELLEFVGFKLQEEDGEMWAIMDVPTEEEINLLSKVIDSIDRPKLDEQQKKASTASALIEPKKVDRQIRVFFAVPENVAANIELPDSFYKLSVEEVKREAIMRKQKIAESQLLVPKSYKEKQAKAARRKYTRTVIRIQFPDGVVLQGVFSPWEPTIALYEFVSTALKEPGLEFELIHPVGVKRRTITHFPAEGERSKTLDDEELVPSALVKFRPIETDSVVFTGLRNELLEIIEPLVSGSAVAPPAQV 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6894714 6898386 - CmPI595203_01g006210.1 Cmu01g0621 406127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0621 469 FunFam UBX domain-containing protein 6 343 434 - -
Cmu01g0621 469 SUPERFAMILY PUG domain-like 177 241 IPR036339 -
Cmu01g0621 469 MobiDBLite consensus disorder prediction 68 85 - -
Cmu01g0621 469 SMART PGNneu 180 247 - -
Cmu01g0621 469 Pfam UBX domain 350 430 IPR001012 GO:0005515(InterPro)
Cmu01g0621 469 Gene3D - 343 435 - -
Cmu01g0621 469 MobiDBLite consensus disorder prediction 15 101 - -
Cmu01g0621 469 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 460 - GO:0050832(PANTHER)
Cmu01g0621 469 ProSiteProfiles UBX domain profile. 349 433 IPR001012 GO:0005515(InterPro)
Cmu01g0621 469 SMART ubx_3 346 435 IPR001012 GO:0005515(InterPro)
Cmu01g0621 469 MobiDBLite consensus disorder prediction 15 52 - -
Cmu01g0621 469 MobiDBLite consensus disorder prediction 53 67 - -
Cmu01g0621 469 CDD PUB 167 263 - -
Cmu01g0621 469 Pfam PUB domain 179 249 IPR018997 -
Cmu01g0621 469 CDD UBX_UBXN6 354 434 - -
Cmu01g0621 469 SUPERFAMILY Ubiquitin-like 320 433 IPR029071 -
Cmu01g0621 469 Gene3D - 174 263 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0621 Cmu-Chr1:6894714 Cmu11g1265 Cmu-Chr11:24672512 7.70E-07 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5474 PF00789 UBX 1.80E-05 CL0072 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0621 K14011 - csv:101209321 823.157