Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0633 ATGGCTACGATGGAGAGCTTGATCGGTTTAGTCAACCGAATCCAGCGAGCCTGCACTGTCTTGGGAGATCATGGCGGCGAGGGAATGTCCCTCTGGGAAGCTCTTCCTTCCGTCGCCGTCGTTGGAGGACAGAGTTCCGGTAAATCTTCAGTGCTGGAAAGCGTGGTCGGTAGAGACTTTCTTCCTCGTGGATCCGGCATTGTAACACGAAGACCATTGGTGTTGCAACTTCATAAGACAGATGAAGGACGATCTGAATATGCAGAGTTTCTCCATGCCCCAAAGAAGAAGTTCGCTGATTTTGCTTCCGTGCGTAAAGAAATATCAGATGAGACTGATCGGATTACTGGGAAGTCAAAGCAAATCTCAAATATACCAATTCATTTGAGCATATATTCTCCAAATGAAGGACAACCTGAGTCTATTGTTGAAGATATTGAAAACATGGTCCGCTCTTATGTTGAGAAACCTAACTGCATTATACTTGCAATTTCTCCTGCTAATCAAGATATTGCAACTTCAGACGCTATAAAGCTTGCAAGGGAAGTTGATCCCTCAGGTGAAAGAACGTTTGGAGTGCTTACAAAACTCGACTTGATGGACAAGGGAACTAATGCTCTGGATGTTCTTGAAGGAAGAGCATACAGGTTGCAGCATCCATGGGTTGGGATTGTAAATCGTTCACAAGCTGATATTAATAAGAATGTAGACATGATTATTGCGCGCAAAAAGGAGCGTGAATATTTTGAAACAAGCCCCGAGTATGGACACCTAGCCCATAAGATGGGCTCAGAGTATCTTGCTAAACTTTTGTCCCAGCACTTGGAGAGGGTTATCAGGCAACGGATTCCAAGTATCATTGCATTGATAAATAAGACAATTGACGAACTGAATGCAGAGTTGGACAGAATTGGCAGACCTATAGCAGTAGATTCGGGGGCACAACTGTACACTATTTTAGAAATGTGTCGTGCCTTTGACCGGGTATTCAAGGAACATCTGGATGGAGGGCGGCCTGGTGGAGATAGAATATACGGGGTTTTTGACCATCAACTACCTGCTGCCCTGAAGAAATTACCTTTTGATCGTCATCTTTCTTTAAAAAATGTCCAAAAAGTTGTGAGTGAAGCTGATGGTTACCAACCTCATTTAATTGCTCCAGAACAAGGATACAGGAGGCTTATTGATGGTTCAATCAGCTATTTCAAGGGTCCGGCTGAAGCTTCTGTTGATGCTGTGCATTTTGTATTAAAAGAACTTGTTCGTAAATCTATAGCCGAAACAGAGGAACTGAAAAGATTTCCAACACTTCAATCTGACATTGCAGCAGCTGCAACAGAGGCATTGGAGCGATTTCGCGAAGAAAGTCGAAAAACAGTTCTACGGTTGGTTGATATGGAGTCTAGCTACCTCACCGTAGATTTTTTCCGAAAGCTGCATATGGAACCAGACAAAAATCCTAATCCTAGCCAAGCAGGGCCAAATGCGGACCGTTATACAGATAACCATTTCAGAAGGATTGGTTCAAACGTGAGTTCTTATATCGGGATGGTTTGTGACACACTGAAAAATTCAATTCCGAAGGCTGTTGTCTACTGTCAAGTTCGAGAGGCCAAGAGATCATTGCTGAACCATTTTTATGTTCAAGTTGGAAAAAGGGAGAAGGAACGGCTTGGTGCTATGTTGGATGAGGATCCAGCACTGATGGAGAGAAGAACAACCATAGCTAAAAGACTCGAGCTTTACAAGTCAGCTCGAGACGAAATCGACTCAGTTGCCTGGAAATGA 1788 43.57 MATMESLIGLVNRIQRACTVLGDHGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTDEGRSEYAEFLHAPKKKFADFASVRKEISDETDRITGKSKQISNIPIHLSIYSPNEGQPESIVEDIENMVRSYVEKPNCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLDLMDKGTNALDVLEGRAYRLQHPWVGIVNRSQADINKNVDMIIARKKEREYFETSPEYGHLAHKMGSEYLAKLLSQHLERVIRQRIPSIIALINKTIDELNAELDRIGRPIAVDSGAQLYTILEMCRAFDRVFKEHLDGGRPGGDRIYGVFDHQLPAALKKLPFDRHLSLKNVQKVVSEADGYQPHLIAPEQGYRRLIDGSISYFKGPAEASVDAVHFVLKELVRKSIAETEELKRFPTLQSDIAAAATEALERFREESRKTVLRLVDMESSYLTVDFFRKLHMEPDKNPNPSQAGPNADRYTDNHFRRIGSNVSSYIGMVCDTLKNSIPKAVVYCQVREAKRSLLNHFYVQVGKREKERLGAMLDEDPALMERRTTIAKRLELYKSARDEIDSVAWK 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7007247 7016194 + CmPI595203_01g006330.1 Cmu01g0633 406139

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0633 595 MobiDBLite consensus disorder prediction 482 501 - -
Cmu01g0633 595 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 292 IPR027417 -
Cmu01g0633 595 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 61 70 IPR019762 -
Cmu01g0633 595 Pfam Dynamin central region 205 473 IPR000375 -
Cmu01g0633 595 Gene3D - 4 293 IPR027417 -
Cmu01g0633 595 Gene3D Dynamin, middle domain 317 572 - -
Cmu01g0633 595 PANTHER DYNAMIN 5 592 IPR022812 GO:0003924(PANTHER)|GO:0005737(PANTHER)|GO:0005874(PANTHER)|GO:0008017(PANTHER)|GO:0016020(PANTHER)
Cmu01g0633 595 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 32 284 IPR030381 GO:0005525(InterPro)
Cmu01g0633 595 SMART dynamin_3 4 235 IPR001401 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu01g0633 595 SMART GED_2 499 592 IPR003130 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu01g0633 595 CDD DLP_1 35 284 IPR001401 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu01g0633 595 Pfam Dynamin GTPase effector domain 501 592 IPR003130 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu01g0633 595 FunFam Dynamin-related protein 1C 315 572 - -
Cmu01g0633 595 Pfam Dynamin family 38 197 IPR045063 -
Cmu01g0633 595 PRINTS Dynamin signature 60 77 IPR022812 -
Cmu01g0633 595 PRINTS Dynamin signature 185 201 IPR022812 -
Cmu01g0633 595 PRINTS Dynamin signature 35 53 IPR022812 -
Cmu01g0633 595 PRINTS Dynamin signature 208 227 IPR022812 -
Cmu01g0633 595 ProSiteProfiles GED domain profile. 504 595 IPR020850 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0633 K27686 - - csv:101212826 1139.41
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0633 Cmu-Chr1:7007247 Cmu09g1208 Cmu-Chr9:13798994 2.80E-248 dispersed
Cmu01g0633 Cmu-Chr1:7007247 Cmu05g0306 Cmu-Chr5:2613100 8.20E-272 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g501 . Blo16g00754 . Bda11g00186 Bpe13g01007 . . . . . . . . . . . Cpe01g01825 . . . . . . . . . . . . . . . . Cone6ag0359 Cone9ag0389 . . . . . . . Bda11g00186 . . . Bma06g01131 . . . . . . . . . Bhi12g00950 . . . Hepe02g2616 . . Cla01g00644 Cam01g0671 Cec01g0663 Cco01g0689 Clacu01g0660 Cmu01g0633 Cre09g1872 Lsi09g00692 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000261 5 7 3 6 5 5 6 5 5 5 4 4 4 6 5 6 4 8 5 5 5 5 5 5 5 4 4 8 5 5 154