Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0659 ATGGAAAGAAACATCTTTCAGCTTTCTCTTCTTCCTCTTGCTTTGCCAGTGATCTTTATCTTATTTGCTTTGGCTTCTTCAGCAGAACAAGAGGTTGTGACTTCAATAAAAACTGATGCTGCAGCTCTTCTTAAGTTCAAGGATTTGATTGACAAGGACCCAAATGGAGTGTTGTCCAGTTGGAAGCTTGAAAGCAATCCATGTTCGTGGTATGGAGTTTCATGTCAATCTAAACGAGTGGTGGCTCTTGATCTGAGTGGTTGTAATCTTGCAGGGAATGTTTATTTTGATCCTCTGTCTTCTATGGATATGTTGATGGCTTTGAATTTGTCTACAAATTCCTTCACTATAAACGCAACTACTTTGCTTCAGCTTCCTTATAATTTGCAGCAACTTGAGCTCTCTCTTGCCAAAGTTGTAGGTAGTGTGCCTGAGAATCTTTTCTCAAAGTGTCCAAACCTTGTGTTTGTGGATCTTTCATTCAACAATTTCACAGGCTATCTGCCTGAAAATCTTCTGTTGAATGCTAACAAGCTTCAAGATCTTGATCTCTCTTACAATAATCTAACTGGGTCGATCTCAGGATTGAGAATTAATGAGAATTCTTGCAACTCTTTGTTGCGGATTGAACTTTCGGCAAATCGAATCGTTGGTTCGATTCCAAGTTCCATTTCAAACTGCACGAATCTGCAAACACTTGGTTTGTCATACAATTTTCTCAGCGGGGAAATCCCAAGATCTTTAGGGGAACTCAGTAGTTTACAGAGGGTCGATATATCTCATAATCAACTCACTGGTTGGCTTCCTTCTGATTGGAGAAATGCCTGCAGTTCACTTCAAGAACTAAAGCTTTGCTACAACAACATTTCTGGTGTAATTCCTGCTTCCTTCTCTGCTTGCTCTTGGCTTCAAATTCTGGATCTTTCAAACAACAACATATCTGGTCCTTTACCAGATTCCATCTTCAAAAATCTTGTCTCTTTACAGAGCTTGCTATTGAGTAATAACGTAATCTCTGGACCATTGCCTTCAACCATATCTCACTGCAAGAAACTTCAGCTTGTAGACTTAAGTTCCAATAGAATTTCTGGTTTGATCCCACCAGGTATATGCCCAGGTGCTGAGTCACTCCAGGAACTGAAAATGCCAGACAATCTCATCATAGGAGGAATCCCACCTGAACTCTCACTGTGTTCACAGTTAAAGACAATTGATTTTAGTTTAAACTATCTGAATGGATCCATACCTGCAGAGCTTGGAAGGCTTCAGAATCTTGAACAGCTAATAGCATGGTTTAATAGCTTAGAAGGGAAAATCCCACCAGAATTGGGGAAGTGTAGAAGCTTGAAGGATGTTATACTAAATAACAATCGTTTAAGTGGTGAAATCCCCACTGAATTGTTCAGTTGTAGCAACCTTGAATGGGTTTCACTCACGAGTAATGAACTCATTGGTGAGGTCCCAAAAGAGTTTGGTCTTTTGTCAAGGCTGGCTGTGCTGCAACTCGGGAACAATAGCTTAAGTGGTCAGATACCAGAGGAGTTGGCGAACTGCAGCACTTTGGTTTGGTTGGATTTGAACAGCAACAAGCTTACTGGGGAAATCCCACCTAGACTTGGCAGGCAGCTTGGAGCCAAATCATTGAATGGGATTCTTTCTGGAAACACTCTAGTGTTCGTCCGAAATGTTGGGAATTCATGTAAAGGAGTTGGTGGTTTGTTAGAGTTTGCTGGAATCAGACCTGAAAGACTACAGCAGGAACCAACATTAAAGACCTGTGATTTCACTAGACTGTACTCCGGTCCGGTCCTCAGTCTGTTTACAAAGTACCAAACTTTGGAGTACTTGGATCTTTCTTACAACGAGCTTCGTGGGAGAATACCAGAAGAGTTTGGAGATATGGTTGCTTTGCAGGTTCTCGAATTATCGCATAACCAACTTTCTGGCGAGATTCCAGCATCATTTGGTCGCCTGAAGAACTTAGGAGTATTTGATGCATCACATAACAGACTGCAGGGTCACATTCCAGATTCATTCTCAAACTTATCATTCTTAGTGCAAATTGATCTATCTTACAATGAACTAACCGGGCGAATTCCATCAAGGGGACAGCTCAGTACACTGCCTGCAAGTCAGTATGCAAACAATCCAGGACTTTGTGGAGTTCCCTTGCCTGAATGCCAGAGTGATGACCAGCCACAGACAAGTCCTAATGTAGATGCTGGCAAAGGAAGAACAAAGCCAGAAGTAGGGTCATGGGTTAACAGTATTGTTTTAGGTGTTCTTATTTCCATTGCTTGTGTCTGCATTTTGATTGTATGGGCCATTGCCATGCGTGCAAGACGAAAAGAAGCAGAGGAAGTGAAGATGCTTAATAGTTTACAAGCAATACATGCCCCTACTACATGGAAAATTGACAAAGAGAAAGAGCCCCTGAGTATCAATGTGGCAACTTTCCAAAGACAACTAAGGAAGCTCAAGTTCTCCCAACTGATTGAAGCTACTAATGGCTTCTCAGCAGAAAGTCTCATAGGGAGTGGCGGGTTCGGTGAAGTGTTTAAAGCAACACTAAAGGATGGATCGAGTGTTGCAATCAAGAAACTGATACGCCTTAGTTGCCAGGGAGATCGTGAATTCATGGCAGAGATGGAAACTTTAGGAAAGATCAAACATGGAAACTTAGTACCTCTTCTGGGTTACTGTAAAATAGGTGAGGAGAGGCTTCTAGTGTATGAGTTTATGGAGTTTGGTAGCCTAGAAGAGATGCTTCACGGAAGAGCAAAGATGCAAGATCGAAGAATTCTAACATGGGATGAAAGGAAAAAGATTGCCAGAGGTGCTGCTAAAGGACTTTGTTTCCTACACCACAACTGCATTCCACACATAATACACAGAGACATGAAGTCCAGCAATGTACTCCTGGACCATGATTTAGAAGCAAGAGTTTCAGATTTCGGAATGGCAAGGCTGATAAGTGCTCTTGACACCCATCTGAGTGTAAGCACACTTGCAGGCACTCCTGGTTACGTCCCTCCTGAGTACTACCAAAGCTTCAGGTGCACAGCAAAAGGCGATGTCTATTCGTTTGGTGTCGTCCTCTTAGAACTCTTGACAGGGAAACGACCAACTGATAAGGAGGATTTTGGGGACACCAACTTGGTGGGATGGGTCAAAATGAAAGTGAATGATGGAAAACAAATGGAAGTGATTGATCCAGAGCTGCTGTCAGTAACCAAAGCAAGTGATGAATCAGAAGCAGAAGAGGTTAAAGAAATGGTTAGATATTTGGAGATAACTCTTCGGTGTGTAGAAGAGTTTCCTTCCAAAAGGCCTAACATGTTGCAGGTGGTGGCCATGCTGCGAGAGTTGATGCCGGGATCAAGCAATGGAAGCAGCAACAGTGCTTGA 3408 42.37 MERNIFQLSLLPLALPVIFILFALASSAEQEVVTSIKTDAAALLKFKDLIDKDPNGVLSSWKLESNPCSWYGVSCQSKRVVALDLSGCNLAGNVYFDPLSSMDMLMALNLSTNSFTINATTLLQLPYNLQQLELSLAKVVGSVPENLFSKCPNLVFVDLSFNNFTGYLPENLLLNANKLQDLDLSYNNLTGSISGLRINENSCNSLLRIELSANRIVGSIPSSISNCTNLQTLGLSYNFLSGEIPRSLGELSSLQRVDISHNQLTGWLPSDWRNACSSLQELKLCYNNISGVIPASFSACSWLQILDLSNNNISGPLPDSIFKNLVSLQSLLLSNNVISGPLPSTISHCKKLQLVDLSSNRISGLIPPGICPGAESLQELKMPDNLIIGGIPPELSLCSQLKTIDFSLNYLNGSIPAELGRLQNLEQLIAWFNSLEGKIPPELGKCRSLKDVILNNNRLSGEIPTELFSCSNLEWVSLTSNELIGEVPKEFGLLSRLAVLQLGNNSLSGQIPEELANCSTLVWLDLNSNKLTGEIPPRLGRQLGAKSLNGILSGNTLVFVRNVGNSCKGVGGLLEFAGIRPERLQQEPTLKTCDFTRLYSGPVLSLFTKYQTLEYLDLSYNELRGRIPEEFGDMVALQVLELSHNQLSGEIPASFGRLKNLGVFDASHNRLQGHIPDSFSNLSFLVQIDLSYNELTGRIPSRGQLSTLPASQYANNPGLCGVPLPECQSDDQPQTSPNVDAGKGRTKPEVGSWVNSIVLGVLISIACVCILIVWAIAMRARRKEAEEVKMLNSLQAIHAPTTWKIDKEKEPLSINVATFQRQLRKLKFSQLIEATNGFSAESLIGSGGFGEVFKATLKDGSSVAIKKLIRLSCQGDREFMAEMETLGKIKHGNLVPLLGYCKIGEERLLVYEFMEFGSLEEMLHGRAKMQDRRILTWDERKKIARGAAKGLCFLHHNCIPHIIHRDMKSSNVLLDHDLEARVSDFGMARLISALDTHLSVSTLAGTPGYVPPEYYQSFRCTAKGDVYSFGVVLLELLTGKRPTDKEDFGDTNLVGWVKMKVNDGKQMEVIDPELLSVTKASDESEAEEVKEMVRYLEITLRCVEEFPSKRPNMLQVVAMLRELMPGSSNGSSNSA 1135
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7454878 7458285 - CmPI595203_01g006590.1 Cmu01g0659 406165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0659 1135 CDD STKc_IRAK 844 1123 - -
Cmu01g0659 1135 SUPERFAMILY L domain-like 595 723 - -
Cmu01g0659 1135 Gene3D - 552 608 - -
Cmu01g0659 1135 FunFam serine/threonine-protein kinase BRI1-like 2 799 913 - -
Cmu01g0659 1135 MobiDBLite consensus disorder prediction 724 746 - -
Cmu01g0659 1135 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 20 1123 IPR050647 -
Cmu01g0659 1135 ProSiteProfiles Protein kinase domain profile. 838 1124 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g0659 1135 ProSitePatterns Serine/Threonine protein kinases active-site signature. 962 974 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu01g0659 1135 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 372 560 - -
Cmu01g0659 1135 Pfam Protein kinase domain 840 1117 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g0659 1135 Pfam Leucine rich repeat 606 647 IPR001611 GO:0005515(InterPro)
Cmu01g0659 1135 Pfam Leucine rich repeat 471 531 IPR001611 GO:0005515(InterPro)
Cmu01g0659 1135 Pfam Leucine rich repeat 206 264 IPR001611 GO:0005515(InterPro)
Cmu01g0659 1135 Pfam Leucine rich repeat 303 362 IPR001611 GO:0005515(InterPro)
Cmu01g0659 1135 Gene3D Phosphorylase Kinase; domain 1 799 913 - -
Cmu01g0659 1135 SUPERFAMILY Protein kinase-like (PK-like) 819 1120 IPR011009 -
Cmu01g0659 1135 SMART serkin_6 838 1124 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g0659 1135 FunFam serine/threonine-protein kinase BRI1-like 2 38 149 - -
Cmu01g0659 1135 Gene3D Transferase(Phosphotransferase) domain 1 914 1133 - -
Cmu01g0659 1135 Pfam Leucine Rich Repeat 178 194 IPR001611 GO:0005515(InterPro)
Cmu01g0659 1135 Pfam Leucine Rich Repeat 660 682 IPR001611 GO:0005515(InterPro)
Cmu01g0659 1135 Pfam Leucine Rich Repeat 278 299 IPR001611 GO:0005515(InterPro)
Cmu01g0659 1135 SUPERFAMILY L domain-like 61 272 - -
Cmu01g0659 1135 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 199 275 - -
Cmu01g0659 1135 Gene3D Ribonuclease Inhibitor 38 150 IPR032675 -
Cmu01g0659 1135 Gene3D Ribonuclease Inhibitor 176 727 IPR032675 -
Cmu01g0659 1135 ProSitePatterns Protein kinases ATP-binding region signature. 844 867 IPR017441 GO:0005524(InterPro)
Cmu01g0659 1135 ProSiteProfiles Leucine-rich repeat profile. 178 200 IPR001611 GO:0005515(InterPro)
Cmu01g0659 1135 Pfam Leucine rich repeat N-terminal domain 37 75 IPR013210 -
Cmu01g0659 1135 SMART LRR_typ_2 325 349 IPR003591 -
Cmu01g0659 1135 SMART LRR_typ_2 494 518 IPR003591 -
Cmu01g0659 1135 SMART LRR_typ_2 303 324 IPR003591 -
Cmu01g0659 1135 SMART LRR_typ_2 276 299 IPR003591 -
Cmu01g0659 1135 SMART LRR_typ_2 251 274 IPR003591 -
Cmu01g0659 1135 SMART LRR_typ_2 422 446 IPR003591 -
Cmu01g0659 1135 SMART LRR_typ_2 447 470 IPR003591 -
Cmu01g0659 1135 SMART LRR_typ_2 634 658 IPR003591 -
Cmu01g0659 1135 FunFam serine/threonine-protein kinase BRI1-like 2 914 1131 - -
Cmu01g0659 1135 Pfam Brassinosteroid receptor island domain 549 607 IPR045381 -
Cmu01g0659 1135 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 605 727 - -
Cmu01g0659 1135 SUPERFAMILY RNI-like 209 538 - -
Cmu01g0659 1135 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 276 366 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0659 Cmu-Chr1:7454878 Cmu01g1542 Cmu-Chr1:29002556 1.10E-144 dispersed
Cmu01g0659 Cmu-Chr1:7454878 Cmu09g0338 Cmu-Chr9:3238215 4.70E-74 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75199 PF00069 Pkinase 1.10E-43 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0659 - - - 0.0