Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0669 ATGGTTTTGTCCAAAACTTTCTCTGAATCCGATGTTTCCATACATTCCACATTTGCCTCTCGCTACGTTCGGGACTCTGCTCCAAGGTTCACCATGCCCGACAACTCCATGCCCAAGGAGGCCGCCTTCCAAATCATCAACGACGAGCTCATGCTCGACGGCAACCCAAGGCTTAATCTAGCCTCCTTCGTCACTACTTGGATGGAGCCCGAATGCGATAAGCTCATCATGGACTCTGTCAACAAGAACTACGTGGACATGGACGAGTACCCTGTCACCACCGAGCTTCAGAACCGCTGCGTCAACATGATTGCCCATCTCTTCAACGCCCCCTTGGGAGACTCCGACACCGCCGTCGGAGTTGGGACGGTGGGGTCGTCGGAGGCCATCATGCTGGCGGGGCTTGCCTTCAAGAGGAAGTGGCAGAACAGGCGGAAAGCAGAGGGGAAGGCTTATGAGAAGCCCAATATTGTGACGGGTGCCAATGTGCAAGTTTGTTGGGAGAAATTTGCGAGATACTTTGAAGTTGAGCTGAAGGAAGTTAAGGTGAGAGAAGGGTATTACGTGATGGACCCTGTTCAAGCGGTTGAGATGGTGGATGAGAATACCATCTGCGTTGCAGCCATTTTGGGGTCAACTTACAATGGTGAATTCGAAGATGTGAAGCTGTTGAATGATTTGTTGGTGGAGAAGAATAAGGAAACTGGATGGGATACTCCCATTCACGTGGATGCGGCCAGCGGTGGGTTCATAGCGCCGTTTCTGTATCCAGAGCTTGAATGGGACTTCAGGCTTCCTCTGGTGAAGAGCATCAATGTGAGCGGCCATAAGTATGGTCTTGTCTACGCTGGAATTGGTTGGGTGATTTGGAGAACCAAACAAGATCTCCCCCAAGAACTCATTTTCCATATCAATTACCTTGGAGCGGACCAACCCACCTTCACTCTCAACTTCTCCAAAGGGTCAAGCCAAATCATTGCGCAGTATTACCAACTAATTCGATTGGGTTTCGAGGGATATCAGAATGTGATGCAAAATTGTCACGACAATGCAATGGTGCTTAAGGAAGGGCTTGAAAACACAGGGAGGTTCACCATAGTTTCAAAGGACATGGGAGTGCCCGTGGTGGCCTTCTCCCTCAAAGACCGAAGCCGGCACGACGAGTTTGAGGTATCAGAGATGTTGCGGCGGTTTGGGTGGATCGTGCCGGCTTATCCAATGCCGGAAGGGGCGAAACACGTATCAGTTCTTCGTGTGGTGATAAGAGAAGATTTCTCTCGCACGCTTGCAGAGCGGCTTGTGCTTGATATTGTAAAGGTTTTGGCTGAGTTAGACACTCTTCCACCAAAGAATGGTGGAAATGAAACGGGTGGAAAGAAGAGGGTAGAGGAAACAGAGAGGGAAATAGCGACTTATTGGAGGAATATAACGAAGGCTAGGAAAATCAAACTTGCTGCTAATCAAGATGGTCCTTCAGTTACCGTCATTGCCAAATAA 1497 49.43 MVLSKTFSESDVSIHSTFASRYVRDSAPRFTMPDNSMPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMDSVNKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGDSDTAVGVGTVGSSEAIMLAGLAFKRKWQNRRKAEGKAYEKPNIVTGANVQVCWEKFARYFEVELKEVKVREGYYVMDPVQAVEMVDENTICVAAILGSTYNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRTKQDLPQELIFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGFEGYQNVMQNCHDNAMVLKEGLENTGRFTIVSKDMGVPVVAFSLKDRSRHDEFEVSEMLRRFGWIVPAYPMPEGAKHVSVLRVVIREDFSRTLAERLVLDIVKVLAELDTLPPKNGGNETGGKKRVEETEREIATYWRNITKARKIKLAANQDGPSVTVIAK 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7594818 7596400 + CmPI595203_01g006690.1 Cmu01g0669 406175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0669 498 Gene3D - 66 360 IPR015421 -
Cmu01g0669 498 SUPERFAMILY PLP-dependent transferases 16 444 IPR015424 -
Cmu01g0669 498 CDD DOPA_deC_like 59 439 - -
Cmu01g0669 498 FunFam Glutamate decarboxylase 1 65 - -
Cmu01g0669 498 FunFam Glutamate decarboxylase 361 448 - -
Cmu01g0669 498 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830(InterPro)|GO:0019752(InterPro)|GO:0030170(InterPro)
Cmu01g0669 498 NCBIfam glutamate decarboxylase 16 444 IPR010107 GO:0004351(InterPro)|GO:0006536(InterPro)|GO:0030170(InterPro)
Cmu01g0669 498 PANTHER GLUTAMATE DECARBOXYLASE 1 481 IPR010107 GO:0004351(InterPro)|GO:0004351(PANTHER)|GO:0005829(PANTHER)|GO:0006536(InterPro)|GO:0006538(PANTHER)|GO:0030170(InterPro)
Cmu01g0669 498 FunFam Glutamate decarboxylase 66 360 - -
Cmu01g0669 498 Gene3D - 1 65 - -
Cmu01g0669 498 Gene3D - 361 448 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0669 Cmu-Chr1:7594818 Cmu01g0829 Cmu-Chr1:9793026 3.00E-243 dispersed
Cmu01g0668 Cmu-Chr1:7576285 Cmu01g0669 Cmu-Chr1:7594818 1.50E-285 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0669 K01580 - csv:101208026 962.6