Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0705 ATGAATGGGAAGGATGAATTTGAAGTTGAGAATAGGACGAGTGATCCTATGAGTATCTCCTCCGGCTGGCAATTTGCTGCTGCTGCTAATCTCACTAATGAGTCTGTTGGATTCGTTTCTACCGGGAATCCTTCTGTTGTTAGCAATGGGGATCTAGGTGTTTCTTCTTGTCCTTCGACTTCAATGTCTAACTTATTTACTTCAACACTTTTGAACCATCATACCGAATCGCAAAACTCGGGATTCTGCACCACTTTTAATGAACAAAACAGCATAGTTGCTTCTAATACGACTGTAGTTGATGGGGAGGGTCTGAATTCTTTGAGATCTAATGGTGATACTAGAACGCTGGGTATGGATTGGAATCAACAAAATCCATGGATGAAAGGAATTTTCTCAGGAAATGTTCCTGGAATATTTCCAGCTAATTTGTCTCAACTTCCAGCTGATTCGGCATTCATCGAACGTGCAGCAAGGTTCTCCTGCTTCAATAGCGGAGTTTTTGGGGCTCCGCCTACTGGTCCATTTGGCATTTCAGACTCTATAGGCATTCATTCTGGGAGTGGATTTGGAAGGCAAGAAGTTATTTCAAGAAATGGAGCCTCCAAAGATGTTTCTTTACCCATGGAGCTTGAGGCTAAAGAAAAGAGTCCATCTAAGAATGAGAAAGATAGCGAAATGTCCCAAGACAGGACTAAACAGGGTTGTGTTGGTGAGTCTGGCAATGATTCTGATGAGGCGGGGTTTAGTGGTGGTCAAGACGAGCGGGGCACGTTGGGAGGTGCCATCACAGAACCATCTACTGAAGGACTGTGCTTCAAGAAAAGGAAAAGGGGTGAGCAGAATGTGGGACTTGGACAAGTTAAAGAAGCTCCACAACAAATCAATGAAACTGCAAAGAATGGAGCATTCAATCAGCAGAAGGGAGATCAAAACCCAAGTTCTACTACTAATAAGCCCGCTGGGAAGCAAGGAAAACAAGATTCTCAACCATCAGATGCTCCCAAAGAAGAATACATTCACGTTAGAGCTCGAAGAGGACAGGCAACAAACAGCCATAGTCTTGCTGAAAGGGTTAGAAGAGAAAAGATAAGTGAAAGAATGAGGCTCCTTCAGGACCTTGTGCCTGGGTGTAGTAAGGTCACTGGCAAAGCTGTAATGCTCGATGAAATCATTAACTATGTACAGTCACTGCAACGGCAAGTTGAGTTTTTGTCAATGAAACTTGCAACGGTTAATCCCAGGCTGGATTTTAACATCGAAGAGCTCCTCGCAAAAGAAATCATTCAATCAAAGGCTGGTCCATCTTTGTTCGGTTTTCCTCCTGATCTGCCTGTGCCTTACCTCCCGCAGCATCCGTCTCACCATGGACTTATTCCGCCTTGTCTTCCTAACATGGGGAGTTCTCCGGACCTGCTACGAAGAACAATTAATTCTCAGCTGACATCACTTGTTGGTGGATTCAAGGAGCCTGTTCAGCTACCAAACCGATGGGAGAATGAACTCCACAATGTTGTTCCGATGAACTTTGATGTGACCGCACCTTCCAGTGGCCAAGATGTTGATGGTTCTACTCCACAATGCAACACCAGAGCAGAACTCTAA 1605 44.49 MNGKDEFEVENRTSDPMSISSGWQFAAAANLTNESVGFVSTGNPSVVSNGDLGVSSCPSTSMSNLFTSTLLNHHTESQNSGFCTTFNEQNSIVASNTTVVDGEGLNSLRSNGDTRTLGMDWNQQNPWMKGIFSGNVPGIFPANLSQLPADSAFIERAARFSCFNSGVFGAPPTGPFGISDSIGIHSGSGFGRQEVISRNGASKDVSLPMELEAKEKSPSKNEKDSEMSQDRTKQGCVGESGNDSDEAGFSGGQDERGTLGGAITEPSTEGLCFKKRKRGEQNVGLGQVKEAPQQINETAKNGAFNQQKGDQNPSSTTNKPAGKQGKQDSQPSDAPKEEYIHVRARRGQATNSHSLAERVRREKISERMRLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKEIIQSKAGPSLFGFPPDLPVPYLPQHPSHHGLIPPCLPNMGSSPDLLRRTINSQLTSLVGGFKEPVQLPNRWENELHNVVPMNFDVTAPSSGQDVDGSTPQCNTRAEL 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7900813 7903387 - CmPI595203_01g007050.1 Cmu01g0705 406211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0705 534 MobiDBLite consensus disorder prediction 302 329 - -
Cmu01g0705 534 Gene3D - 345 419 IPR036638 GO:0046983(InterPro)
Cmu01g0705 534 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 348 398 IPR011598 GO:0046983(InterPro)
Cmu01g0705 534 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 145 449 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cmu01g0705 534 SMART finulus 354 404 IPR011598 GO:0046983(InterPro)
Cmu01g0705 534 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 346 417 IPR036638 GO:0046983(InterPro)
Cmu01g0705 534 CDD bHLH_AtBPE_like 338 423 - -
Cmu01g0705 534 MobiDBLite consensus disorder prediction 200 275 - -
Cmu01g0705 534 MobiDBLite consensus disorder prediction 302 335 - -
Cmu01g0705 534 MobiDBLite consensus disorder prediction 208 230 - -
Cmu01g0705 534 FunFam Basic helix-loop-helix transcription factor 345 417 - -
Cmu01g0705 534 MobiDBLite consensus disorder prediction 513 534 - -
Cmu01g0705 534 Pfam Helix-loop-helix DNA-binding domain 351 399 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0705 Cmu-Chr1:7900813 Cmu05g2393 Cmu-Chr5:33161783 1.50E-107 dispersed
Cmu01g0705 Cmu-Chr1:7900813 Cmu02g0518 Cmu-Chr2:4806900 1.30E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5481 PF00010 HLH 6.60E-06 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0705 - - - 0.0