Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0713 ATGGAAATTAGGGGGAAAAATGGGTTACTGTTTTGTCTGGCTTTGCTTTGGTTATGGGCTTTTCCAAGTGAGGCTTCAACAAACAAAGATTTTAACCCTGAGGTTCAAGCTTTGATGGGGATCAAAGCTGCTTTGAAGGATCCTCATTCTGTTCTGACTTGGGATGACAATGCTGTGGATGCATGCACTTGGAATTTCATCACTTGCTCTCCCGATAAACTAGTCATTGGCATAGGAGCTCCAAGCCAAAACTTTTCTGGTACACTCTCACCAAGTATTGCAAATTTGACAAACCTCCAATTTCTGCTTCTTCAGAATAACAATATATCAGGAAAAATCCCCAATGAGATTAGCAAGATACCTAAACTTCGCACACTTGATCTTTCAAACAACTTGTTCTCTGGAGAAATTCCCAGCTCTTTCTCCAATATGAAAAGCCTTCAATACCTGAGACTCAACAATAACACCTTTTCAGGGCCAATCCCAGCATCACTGGCTAACATGACCCAGCTTGCCCTGCTGGACTTGTCCTATAATAATTTGAGCAGTCCTGTGCCCAGACTGCTGGCTAAGACATTTAACTTTACCGGAAACTCTTTGATATGTTCCCCTGGAATTAAGGAAGTATGCTATGGAACAACTCCATTGCCACTTTCTTTTGTTGTTACTAATTCCACATATTCTCAACCTCCTAGGAGACACAAAGGCCAGAGAATTGCCTTAGTCATTGGTCTCAGCTTGCTCTGCATCTGTCTGTTCACTCTTGCATATGGTTTCTTTTTCTGGCGGAAGCATAGGCACAACCAGCAAATATTCTTTGAAGCTAATGATTGGCATCGGGAAGAACATAGCCTAGGGAACATAAAGAGGTTCCAGTTCAGAGAACTTCAGAATGCTACCCACAATTTCAGCAGTAAAAACTTGGTTGGAAAAGGTGGTTTTGGAAATGTATACAGAGGATATCTACAAGATGGCACCATTATAGCTGTAAAGAGACTCAAAGATGGGAATGCTGTGAGAGGAGAGATCCAATTTCAGACTGAAGTGGAAATGATAAGCTTGGCAGTGCATAGGAACCTACTCAGATTATATGGTTTCTGTATGACAGAAACTGAGAGGCTTTTGGTCTATCCATACATGTCGAATGGCAGTGTCGCTACCCGTCTTAAAGCAAAACCAGCTCTGGATTGGGGTACAAGGAAGAGAATTGCCTTGGGAGCTGCTAGGGGTTTGTTATACCTACACGAACAGTGTGATCCAAAAATAATTCACAGGGATGTGAAAGCTGCAAATATACTGCTTGATGATTTCTGTGAGGCAGTGGTGGGTGATTTTGGGCTGGCAAAGCTGTTAGATCACAGAGACTCACATGTCACTACTGCAGTGAGGGGAACTGTTGGGCACATTGCACCAGAGTATCTATCAACAGGCCAATCCTCTGAGAAAACAGATGTTTTCGGGTTTGGAATTCTACTACTTGAGCTCATATCAGGTCAAAGAGCTCTTGAATTTGGAAAAGCAGCAAACCAAAAGGGTGCAATACTGGACTGGGTAAAGAAGATACACCAAGAAAAGAAGCTTGAAATGCTTGTTGACAAAGACTTGAAAAGTAATTATGACCCGATTGAACTTGAAGAAATTGTTCGAGTCGCTCTCTTGTGCATTCAATATCTTCCAAGCCACAGGCCTAAGATGTCTGAAGTGGTCAGGATGCTAGAAGGAGATGGGCTTGCAGAGAAATGGGAAGCTTCCCAAAGGGCAGAAGCAAGCAGGAGCAGAGCCAATGAGTTCTCCTCTTCAGAACGTTACTCTGATCTTACTGATGACTCTTCATTGTTTGCTCAAGCAATAGAGCTCTCGGGACCGAGATAA 1872 42.79 MEIRGKNGLLFCLALLWLWAFPSEASTNKDFNPEVQALMGIKAALKDPHSVLTWDDNAVDACTWNFITCSPDKLVIGIGAPSQNFSGTLSPSIANLTNLQFLLLQNNNISGKIPNEISKIPKLRTLDLSNNLFSGEIPSSFSNMKSLQYLRLNNNTFSGPIPASLANMTQLALLDLSYNNLSSPVPRLLAKTFNFTGNSLICSPGIKEVCYGTTPLPLSFVVTNSTYSQPPRRHKGQRIALVIGLSLLCICLFTLAYGFFFWRKHRHNQQIFFEANDWHREEHSLGNIKRFQFRELQNATHNFSSKNLVGKGGFGNVYRGYLQDGTIIAVKRLKDGNAVRGEIQFQTEVEMISLAVHRNLLRLYGFCMTETERLLVYPYMSNGSVATRLKAKPALDWGTRKRIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDFCEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELISGQRALEFGKAANQKGAILDWVKKIHQEKKLEMLVDKDLKSNYDPIELEEIVRVALLCIQYLPSHRPKMSEVVRMLEGDGLAEKWEASQRAEASRSRANEFSSSERYSDLTDDSSLFAQAIELSGPR 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7970515 7973501 - CmPI595203_01g007130.1 Cmu01g0713 406219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0713 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 422 434 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu01g0713 623 ProSiteProfiles Protein kinase domain profile. 303 582 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g0713 623 FunFam Somatic embryogenesis receptor-like kinase 1 380 592 - -
Cmu01g0713 623 Pfam Leucine Rich repeats (2 copies) 97 132 IPR025875 -
Cmu01g0713 623 MobiDBLite consensus disorder prediction 583 605 - -
Cmu01g0713 623 Pfam Leucine rich repeat 138 181 IPR001611 GO:0005515(InterPro)
Cmu01g0713 623 SUPERFAMILY L domain-like 34 203 - -
Cmu01g0713 623 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 9 623 - -
Cmu01g0713 623 Gene3D Transferase(Phosphotransferase) domain 1 380 592 - -
Cmu01g0713 623 Pfam Protein tyrosine and serine/threonine kinase 306 572 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu01g0713 623 Gene3D Phosphorylase Kinase; domain 1 272 379 - -
Cmu01g0713 623 SMART serkin_6 303 572 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g0713 623 SUPERFAMILY Protein kinase-like (PK-like) 282 573 IPR011009 -
Cmu01g0713 623 Gene3D Ribonuclease Inhibitor 31 212 IPR032675 -
Cmu01g0713 623 MobiDBLite consensus disorder prediction 590 605 - -
Cmu01g0713 623 FunFam Somatic embryogenesis receptor kinase 1 272 379 - -
Cmu01g0713 623 Pfam Leucine rich repeat N-terminal domain 32 70 IPR013210 -
Cmu01g0713 623 ProSitePatterns Protein kinases ATP-binding region signature. 309 331 IPR017441 GO:0005524(InterPro)
Cmu01g0713 623 FunFam Putative LRR receptor-like serine/threonine-protein kinase 31 212 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0713 Cmu-Chr1:7970515 Cmu05g2383 Cmu-Chr5:33065048 4.60E-233 dispersed
Cmu01g0713 Cmu-Chr1:7970515 Cmu01g2325 Cmu-Chr1:35427622 9.50E-146 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75200 PF00069 Pkinase 9.40E-44 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0713 - - - 0.0