Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0720 ATGGTTGTTGCTCTTGAAACCACCCGATTCCATGTTCTTGCTGTCGATGATAGCTTCATCGATAGGAAGTTGATTGAACGCCTCCTCAAAACCTCTTCCTATCATGTTACTGCAGTTGATTCCGGTACGAAGGCCTTGGAATTTCTTGGTCTTGTTGAAGATCATGATCACGATGAAGAAACAGACTCCAAAATCGCTCCCTCAAATCATCATCATGAAGAAGTGGATGTAAATTTGATCATCACGGATTACAGTATGCCTGGAATGAGTGGTTACGAACTCCTTAGGAAGATCAAGGAATCGAAATCTCTCAAAGACATACCAGTTGTGATTATGTCCTCTGAGAATGTTCCTTCAAGAATCAATAGATGCTTGGAAGAAGGAGCGGAAGAATTCTTCCTCAAACCAGTTCAATTGTCTGATGTGAGGAAGTTGAGACCTCATTTGATTAAAGAAAAATCCGCCAGGAATTGA 474 41.14 MVVALETTRFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDHDHDEETDSKIAPSNHHHEEVDVNLIITDYSMPGMSGYELLRKIKESKSLKDIPVVIMSSENVPSRINRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKSARN 157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8075246 8075981 + CmPI595203_01g007200.1 Cmu01g0720 406226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0720 157 ProSiteProfiles Response regulatory domain profile. 11 150 IPR001789 GO:0000160(InterPro)
Cmu01g0720 157 Pfam Response regulator receiver domain 12 143 IPR001789 GO:0000160(InterPro)
Cmu01g0720 157 Gene3D - 11 157 - -
Cmu01g0720 157 SMART REC_2 10 146 IPR001789 GO:0000160(InterPro)
Cmu01g0720 157 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 152 IPR045279 GO:0009736(InterPro)
Cmu01g0720 157 SUPERFAMILY CheY-like 9 148 IPR011006 -
Cmu01g0720 157 CDD REC_typeA_ARR 12 145 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0720 Cmu-Chr1:8075246 Cmu05g2725 Cmu-Chr5:35717799 1.70E-51 dispersed
Cmu01g0720 Cmu-Chr1:8075246 Cmu05g2549 Cmu-Chr5:34264382 3.40E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5483 PF00072 Response_reg 1.40E-20 CL0304 Cmu TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0720 K14492 - csv:101210839 278.1