Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0729 ATGAAGAAGGGCTGGTTTTATTTAGTCAAGAAGCTATTTGTTTCAGAGACACCGCCAAAGCCTGAGAAGAAGCAAAAGAGATGGAAATGGGTGTTTGGAAGGATGAGGAACAAGAGACTAGCCACACTGACAGCACCATCGCCGGCAAAAGTGACAACCAGCCAAGAGGAGGAAGAGGAGAGGAAGCAGGCTCTTTCTGTGGCCATTGCGAGCACTGCAGCGGCCGAGGCGGCAGTTGCAGCAGCTAAGGCTGCTGTTGAGGTTGTTTGGCTCACAGGGACCCCTCAATCTCATCAACAAGAGGCTGCAGATGAAGTCGTTAAGCCTCTCAAGAAGGCCCCTCCATCTGATCTCCTTAAACGTGAAAGGGAAATCCATGATATTGCTGCTATTACTATCCAAACCGCTTTCCGTGGCTTCCTTGCGAGAAAAGCATTGAGAGCATTGAAAGGAATAGTGAGGCTACAGGCAATTATTAGAGGGAGAGCTGTTAGGCGCCAAGCCATTGCCACTTTGAAGTGCTTGCAGTCCATCGTTAGCATACAATCACAAGTCCGTTCAAATAGACTTCATCTTCCTCAAAACACTTTCAATTCTCCTGAAACGAAGCAGTTTCAGAGCTTGAAAGATAAGATCATAAAGTTGGATTCGAACGATCAAAGGTGGGATGATAGCCTATTATCAAAAGAAGAAGCAGATTCAGCGTTTTTGAGCAGGAAAGAAGCAGTGATTAGGAGAGAGCGAGTCAAGGAATACTTATTTGCCCACAGGAGGTCTGCAGAATCAGAACGAAAGAAGGTAAGAGGAAGATGGAGATACTGGCTAGACCAATGGGTCGACACCCAACTTTCCAAAAGCAAAGAACTCGAAGATTTGGACTCCATGTTCACCTCAAATCCAAAACACAATGAGATAACAAACGACAGATTCAAAACAAACCCAACAACAAAAAATATGGACAGAACAATAGAAGAACACCCCAACCAATCTCCATCTCAAAAACCAGTTCTGAAAAAGCTCTCTCACCACAAGAAGCAACGTTCATTGGAAGGTGGAATAGACTCAAACAGCTCATTTGCAAGCTCCCCACTGGTGCCAACATACATGGCTGCCACTGAATCAGCGAAGGCAAAAGCAAGGTCCTTGAGCTCCCCCAAGCTAAGGCCAGCAGGGGGATTGGACACATGCTCTGATGGGAATTCTCCATGCAAGACAAAGCAGCTCAGTTTGGTGTCTTCAATGGTGAGTGAAGTTGGAATTAGCAGTGGGAGAAGAGGTTTTCATCAGCAGCAAAGATCACCAGGGCTGAAGGGACTTCCAGGGCCAACAAGATCAAGCAGAACTCTCACCAAGGATTTGAGCATTGATTCTGAGCATTCCTTGCCAAACTGGGATAGACAAACTGCCTTCCAATGA 1416 46.19 MKKGWFYLVKKLFVSETPPKPEKKQKRWKWVFGRMRNKRLATLTAPSPAKVTTSQEEEEERKQALSVAIASTAAAEAAVAAAKAAVEVVWLTGTPQSHQQEAADEVVKPLKKAPPSDLLKREREIHDIAAITIQTAFRGFLARKALRALKGIVRLQAIIRGRAVRRQAIATLKCLQSIVSIQSQVRSNRLHLPQNTFNSPETKQFQSLKDKIIKLDSNDQRWDDSLLSKEEADSAFLSRKEAVIRRERVKEYLFAHRRSAESERKKVRGRWRYWLDQWVDTQLSKSKELEDLDSMFTSNPKHNEITNDRFKTNPTTKNMDRTIEEHPNQSPSQKPVLKKLSHHKKQRSLEGGIDSNSSFASSPLVPTYMAATESAKAKARSLSSPKLRPAGGLDTCSDGNSPCKTKQLSLVSSMVSEVGISSGRRGFHQQQRSPGLKGLPGPTRSSRTLTKDLSIDSEHSLPNWDRQTAFQ 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8205121 8208034 + CmPI595203_01g007290.1 Cmu01g0729 406235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0729 471 ProSiteProfiles IQ motif profile. 126 154 - -
Cmu01g0729 471 ProSiteProfiles IQ motif profile. 150 177 - -
Cmu01g0729 471 SMART iq_5 125 147 IPR000048 GO:0005515(InterPro)
Cmu01g0729 471 MobiDBLite consensus disorder prediction 300 361 - -
Cmu01g0729 471 Pfam Protein of unknown function (DUF4005) 352 431 IPR025064 -
Cmu01g0729 471 MobiDBLite consensus disorder prediction 421 471 - -
Cmu01g0729 471 PANTHER IQ-DOMAIN 5-RELATED 1 404 - -
Cmu01g0729 471 MobiDBLite consensus disorder prediction 304 324 - -
Cmu01g0729 471 Gene3D - 126 176 - -
Cmu01g0729 471 MobiDBLite consensus disorder prediction 443 471 - -
Cmu01g0729 471 MobiDBLite consensus disorder prediction 376 402 - -
Cmu01g0729 471 Pfam IQ calmodulin-binding motif 129 147 IPR000048 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0729 Cmu-Chr1:8205121 Cmu04g0918 Cmu-Chr4:23663822 2.50E-21 dispersed
Cmu01g0729 Cmu-Chr1:8205121 Cmu09g1952 Cmu-Chr9:35600847 1.80E-27 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0729 - - - 0.0