Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0729 ATGAAGAAGGGCTGGTTTTATTTAGTCAAGAAGCTATTTGTTTCAGAGACACCGCCAAAGCCTGAGAAGAAGCAAAAGAGATGGAAATGGGTGTTTGGAAGGATGAGGAACAAGAGACTAGCCACACTGACAGCACCATCGCCGGCAAAAGTGACAACCAGCCAAGAGGAGGAAGAGGAGAGGAAGCAGGCTCTTTCTGTGGCCATTGCGAGCACTGCAGCGGCCGAGGCGGCAGTTGCAGCAGCTAAGGCTGCTGTTGAGGTTGTTTGGCTCACAGGGACCCCTCAATCTCATCAACAAGAGGCTGCAGATGAAGTCGTTAAGCCTCTCAAGAAGGCCCCTCCATCTGATCTCCTTAAACGTGAAAGGGAAATCCATGATATTGCTGCTATTACTATCCAAACCGCTTTCCGTGGCTTCCTTGCGAGAAAAGCATTGAGAGCATTGAAAGGAATAGTGAGGCTACAGGCAATTATTAGAGGGAGAGCTGTTAGGCGCCAAGCCATTGCCACTTTGAAGTGCTTGCAGTCCATCGTTAGCATACAATCACAAGTCCGTTCAAATAGACTTCATCTTCCTCAAAACACTTTCAATTCTCCTGAAACGAAGCAGTTTCAGAGCTTGAAAGATAAGATCATAAAGTTGGATTCGAACGATCAAAGGTGGGATGATAGCCTATTATCAAAAGAAGAAGCAGATTCAGCGTTTTTGAGCAGGAAAGAAGCAGTGATTAGGAGAGAGCGAGTCAAGGAATACTTATTTGCCCACAGGAGGTCTGCAGAATCAGAACGAAAGAAGGTAAGAGGAAGATGGAGATACTGGCTAGACCAATGGGTCGACACCCAACTTTCCAAAAGCAAAGAACTCGAAGATTTGGACTCCATGTTCACCTCAAATCCAAAACACAATGAGATAACAAACGACAGATTCAAAACAAACCCAACAACAAAAAATATGGACAGAACAATAGAAGAACACCCCAACCAATCTCCATCTCAAAAACCAGTTCTGAAAAAGCTCTCTCACCACAAGAAGCAACGTTCATTGGAAGGTGGAATAGACTCAAACAGCTCATTTGCAAGCTCCCCACTGGTGCCAACATACATGGCTGCCACTGAATCAGCGAAGGCAAAAGCAAGGTCCTTGAGCTCCCCCAAGCTAAGGCCAGCAGGGGGATTGGACACATGCTCTGATGGGAATTCTCCATGCAAGACAAAGCAGCTCAGTTTGGTGTCTTCAATGGTGAGTGAAGTTGGAATTAGCAGTGGGAGAAGAGGTTTTCATCAGCAGCAAAGATCACCAGGGCTGAAGGGACTTCCAGGGCCAACAAGATCAAGCAGAACTCTCACCAAGGATTTGAGCATTGATTCTGAGCATTCCTTGCCAAACTGGGATAGACAAACTGCCTTCCAATGA 1416 46.19 MKKGWFYLVKKLFVSETPPKPEKKQKRWKWVFGRMRNKRLATLTAPSPAKVTTSQEEEEERKQALSVAIASTAAAEAAVAAAKAAVEVVWLTGTPQSHQQEAADEVVKPLKKAPPSDLLKREREIHDIAAITIQTAFRGFLARKALRALKGIVRLQAIIRGRAVRRQAIATLKCLQSIVSIQSQVRSNRLHLPQNTFNSPETKQFQSLKDKIIKLDSNDQRWDDSLLSKEEADSAFLSRKEAVIRRERVKEYLFAHRRSAESERKKVRGRWRYWLDQWVDTQLSKSKELEDLDSMFTSNPKHNEITNDRFKTNPTTKNMDRTIEEHPNQSPSQKPVLKKLSHHKKQRSLEGGIDSNSSFASSPLVPTYMAATESAKAKARSLSSPKLRPAGGLDTCSDGNSPCKTKQLSLVSSMVSEVGISSGRRGFHQQQRSPGLKGLPGPTRSSRTLTKDLSIDSEHSLPNWDRQTAFQ 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8205121 8208034 + CmPI595203_01g007290.1 Cmu01g0729 406235

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0729 471 ProSiteProfiles IQ motif profile. 126 154 - -
Cmu01g0729 471 ProSiteProfiles IQ motif profile. 150 177 - -
Cmu01g0729 471 SMART iq_5 125 147 IPR000048 GO:0005515(InterPro)
Cmu01g0729 471 MobiDBLite consensus disorder prediction 300 361 - -
Cmu01g0729 471 Pfam Protein of unknown function (DUF4005) 352 431 IPR025064 -
Cmu01g0729 471 MobiDBLite consensus disorder prediction 421 471 - -
Cmu01g0729 471 PANTHER IQ-DOMAIN 5-RELATED 1 404 - -
Cmu01g0729 471 MobiDBLite consensus disorder prediction 304 324 - -
Cmu01g0729 471 Gene3D - 126 176 - -
Cmu01g0729 471 MobiDBLite consensus disorder prediction 443 471 - -
Cmu01g0729 471 MobiDBLite consensus disorder prediction 376 402 - -
Cmu01g0729 471 Pfam IQ calmodulin-binding motif 129 147 IPR000048 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0729 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0729 Cmu-Chr1:8205121 Cmu04g0918 Cmu-Chr4:23663822 2.50E-21 dispersed
Cmu01g0729 Cmu-Chr1:8205121 Cmu09g1952 Cmu-Chr9:35600847 1.80E-27 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu09g1952 . 129 607 IQD Protein Family AT3G52290 54.2 2.4e-103 372.9
Cmu05g2144 . 1766 1975 IQD Protein Family AT2G26410 51.2 2.0e-43 174.1
Cmu03g1772 . 36 443 IQD Protein Family AT3G22190 57.8 9.5e-97 350.9
Cmu05g1839 . 1 438 IQD Protein Family AT2G26180 61.6 3.9e-119 425.2
Cmu01g2294 . 25 298 IQD Protein Family AT2G33990 52.1 7.3e-63 237.7
Cmu07g0985 . 109 292 IQD Protein Family AT2G33990 54.0 1.7e-48 189.9
Cmu01g2294 . 25 246 IQD Protein Family AT3G15050 50.9 1.5e-55 213.4
Cmu07g0985 . 112 285 IQD Protein Family AT3G15050 62.1 3.6e-54 208.8
Cmu01g0729 . 119 471 IQD Protein Family AT5G13460 50.4 8.2e-75 278.1
Cmu06g0268 . 1 509 IQD Protein Family AT4G00820 51.4 7.5e-115 411.4
Cmu06g0268 . 1 509 IQD Protein Family AT1G01110 50.1 2.5e-110 396.4
Cmu09g0023 . 1 399 IQD Protein Family AT3G16490 50.5 1.2e-66 250.8
Cmu03g2201 . 1 391 IQD Protein Family AT3G16490 50.2 5.2e-65 245.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007465 1 2 1 1 0 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 0 35