Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0743 ATGAAAGAAAAGCACATTCTGATAATAACATTTTCCTTCAAATGTATTAAACTATCGCCTCCCTCCCTTTTTAATCTCTTTCACGAGAAGAGAAGAAGCCATGGGCAGAATCATGTTAATCTAGGATATTCATTTCATTCCTCATTTTGTAAACCTATTGCTCCATTCTTTCATGATTTGCGTGCACGTTATTTAAAGCTGGAGATGTCAACCCAGCAGCAAAATTCTGATTCGAATGGCGTTTCAGGCGCCTGTCTCTTTGATCTCCTGTTTCCAGATTCAGAAATGCAAGGCTGGGACTGGAGTCGGATGCCCTCTGATTCAGAAACGCAACGCTGGAATTGGAAGAAAGACCAACAGCTCTCTGGCCCCCAGAAAAGGTTAGAAGATCTGTTGCGGCAGTCTGGTAATAAGTTTTGTGCAGATTGCGGAGCACCGGACCCAAAATGGGTATCGTTAAATTTGGGAGTGTTTATCTGTATAAAGTGTTCTGGAGTACACAGAAGTCTTGGAGTTCATATCTCTAAGGTTTTCTCAGTGAAATTAGATAATTGGACGGATGAACAAGTCAATACTTTGATGAGCATGGGCGGAAACACAGATGTAAACAAGAAGTATGAAGCCGGCATCATCGATGGGAACAGAAAACCAAAACCAGATTCTTGTATAGAGGAGCGCTTCGATTTTATAAGGAGAAAGTATGAACTGCTGCAATTTTATAACGCCACTAGTCAAAATTCTACCGATAACTCATTTAGTAAAAGAAGTTCATCATGCTCCCAAAGTAGTAACCCTTCGAGCAAGAATGGTAGCCACGACAAAAGACACTATGAGAAACAAGCTACTAGGCATCGCATCGGGCATGCATTTCGTAACAGCCGAGTAAGAAGAGATGGTGACCACAAGAGTTTTGACAAGAGCAGCCCTGCAGTCTCAAGACAAGCATCGGCAGGTATGGTTGAATTTGTTGGCTTGGTTAAGGTCAATGTGGTTAGAGGCACAAACTTAGCTGTCCGAGATGTGGTGACCAGCGATCCCTATGTAATTCTCACGTTGGGTCATCAATCGGTGAGGACTCGTGTCATAAAGAACAACCTAAACCCAGTTTGGAACGAGAGCCTAATGTTATCGATTCCCGAGCATATCCCTCCGCTAAAGCTGCTTGTCTATGATAAGGACACATTTTCGACTGATGACTTTATGGGTGAGGCCGAAATCGACATTCAACCGTTGGTCGCTGCGACCAAGGCCTATGAGAAATCCACAATTGATGAATCAATGCAGCTGGGAAAATGGGTGGCAAGTAATGACAATACCTTGGTAAAAGATGGAATCATTAACCTTGTAGATGGAAAGGTCAGACAGGATATATCTCTTAGATTGCAGAATGTGGAGAGAGGTATCCTTGAGATTGAGCTAGAATGCATTCCTCTTACACAATAG 1443 42.69 MKEKHILIITFSFKCIKLSPPSLFNLFHEKRRSHGQNHVNLGYSFHSSFCKPIAPFFHDLRARYLKLEMSTQQQNSDSNGVSGACLFDLLFPDSEMQGWDWSRMPSDSETQRWNWKKDQQLSGPQKRLEDLLRQSGNKFCADCGAPDPKWVSLNLGVFICIKCSGVHRSLGVHISKVFSVKLDNWTDEQVNTLMSMGGNTDVNKKYEAGIIDGNRKPKPDSCIEERFDFIRRKYELLQFYNATSQNSTDNSFSKRSSSCSQSSNPSSKNGSHDKRHYEKQATRHRIGHAFRNSRVRRDGDHKSFDKSSPAVSRQASAGMVEFVGLVKVNVVRGTNLAVRDVVTSDPYVILTLGHQSVRTRVIKNNLNPVWNESLMLSIPEHIPPLKLLVYDKDTFSTDDFMGEAEIDIQPLVAATKAYEKSTIDESMQLGKWVASNDNTLVKDGIINLVDGKVRQDISLRLQNVERGILEIELECIPLTQ 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8379126 8391897 + CmPI595203_01g007430.1 Cmu01g0743 406249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0743 480 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 322 480 - -
Cmu01g0743 480 SMART C2_3c 325 420 IPR000008 -
Cmu01g0743 480 Pfam C2 domain 325 413 IPR000008 -
Cmu01g0743 480 Pfam Putative GTPase activating protein for Arf 126 241 IPR001164 GO:0005096(InterPro)
Cmu01g0743 480 ProSiteProfiles ARF GTPase-activating proteins domain profile. 125 247 IPR001164 GO:0005096(InterPro)
Cmu01g0743 480 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 115 480 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
Cmu01g0743 480 Gene3D C2 domain 323 477 IPR035892 -
Cmu01g0743 480 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 321 415 IPR035892 -
Cmu01g0743 480 MobiDBLite consensus disorder prediction 245 268 - -
Cmu01g0743 480 MobiDBLite consensus disorder prediction 245 310 - -
Cmu01g0743 480 CDD C2_ArfGAP 323 467 - -
Cmu01g0743 480 PRINTS HIV Rev interacting protein signature 137 156 IPR001164 GO:0005096(InterPro)
Cmu01g0743 480 PRINTS HIV Rev interacting protein signature 177 198 IPR001164 GO:0005096(InterPro)
Cmu01g0743 480 PRINTS HIV Rev interacting protein signature 156 173 IPR001164 GO:0005096(InterPro)
Cmu01g0743 480 SUPERFAMILY ArfGap/RecO-like zinc finger 125 241 IPR037278 -
Cmu01g0743 480 Gene3D Arf GTPase activating protein 106 248 IPR038508 -
Cmu01g0743 480 MobiDBLite consensus disorder prediction 292 307 - -
Cmu01g0743 480 SMART arf_gap_3 125 248 IPR001164 GO:0005096(InterPro)
Cmu01g0743 480 CDD ArfGap 128 234 - -
Cmu01g0743 480 FunFam stromal membrane-associated protein 1 isoform X1 109 245 - -
Cmu01g0743 480 ProSiteProfiles C2 domain profile. 305 422 IPR000008 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0743 Cmu-Chr1:8379126 Cmu05g2722 Cmu-Chr5:35680536 1.20E-140 dispersed
Cmu01g0743 Cmu-Chr1:8379126 Cmu01g2459 Cmu-Chr1:36550089 1.20E-90 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0743 K12486 - csv:101215531 757.288