Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0784 ATGCCCTACACTTCCATCCCTTTGAACTTCGATTTCAGTTTCACTCTCACCTTCTCGCCTTTTCCCTCTCCCTGCTTGACGCTGTTGCCGCGCCACCGTCTCTCTCTGTTCAGCGCCGCCGTCTCTCTCCGTTCAGCGCCGCCTCCTCTCTCCGGTCAGCGCCGTCGCCTCTCTCCGGTCAGCGCCGTCGCCTCTCTCCGGTCAGCGCCGTCGCCGCCCTCCGTTCAGCGCCGTCGCCGCCCTCCTACCGGTATTCTCTCGATCTCCATCTATGACGTAAAGAGAGCAGCCAGTATGTTCTTCCACATAGTTTTGGAGAGGAATATGCAGCTACATCCACGGCACTTTGGCCGTAACCTCCGTGAGAACCTTGTCTCAAAACTTATGAAAGATGTTGAAGGCACTTGCAGTGGCCGACATGGTTTTGTTGTGGCAATTACGGGAATTGAGAATATTGGGAAAGGGTTGATCCGTGATGGAACAGGTTTTGTCACTTTTCCTGTTAAGTACCAATGTGTCGTGTTTAGACCATTCAAGGGAGAAATTTTAGAAGCTGTTGTTACTATGGTAAATAAGATGGGTTTCTTTGCTGAAGCTGGACCTGTTCAGATTTTTGTTTCAAACCATTTGATACCAGATGATATGGAGTTCCAGTCTGGAGATGTGCCAAACTATACCACCTCGGATGGATCAGTTAAGATTCAGAAAGACAGTGAAGTTCGATTAAAGATAATTGGGACTCGAGTAGATGCAACTGAAATTCTTGTAAACAAAGCTGTAATGGCGAGCATATACTGGATGGTCTCCTTACCTGTTCAAGGCTCCGCTTCTTCCCTTTGGAATCGTCTCCAAGAACAAATCTCCAAGCACTCTTTCGATACTCCTCTTTACAGATTCAATATTCCTAATCTCCGTGTTGGAACGCTCGATTCGCTCCTTTCTCTCAGCGATGATCTTCTGAAGTCGAACAGCTTTGTGGAAGGAGTTTCTCAGAAGATCAGACGGCAGATCGAGGAACTGGAGAGGGTTTCAGGTGTGGAGAGCAATGTTTTGACGGTTGATGGAGTCCCCGTTGATTCGTATCTTACTAGGTTTGTGTGGGATGAAGCCAAGTACCCGACAATGTCGCCTCTGAGAGACATTGTGGATAGCATTCACAGTCAAGTGGCCAAGATTGAGGATGACCTCAAGATTCGTGTTGCTGAGTACTATAATGTGCGGAGTCAACTTAATGCCATTAACAGAAAGCAAAGTGGAAGCTTGGCAGTCCGTGATATTTCCAATCTTGTAAAACCAGAGGACATAATTACCTCAGAACATCTAGCAACCCTTCTAGTGATTGTTCCCAAGTACTCTCAGAAAGAGTGGCTATCTAGCTATGAAACACTGACTAGCTATGTGGTTCCCAGGTCTTCGAAGAAATTATACGAGGATAATGAATATGCCCTTTACACTGTAACACTCTTTAGTCGCGTTGCAGACAATTTCAAAACAAGTGCACGTGAAAAAGGGTTCCAGATTCGTGAATTTGAATATAGTCCAGAAGCACAAGAGAGTAGAAAACAGGAGTTAGAAAAGTTGGTGCAGGACCAGGAAAGTTTGAGAAGTTCTTTATTGCAGTGGTCCTACGCTAGTTATGCTGAGGTTTTCATTTCCTGGATGCACTTCTGTGCCGTACGTGTGTTTGCTGAGAGTATCCTGAGATATGGTTTACCACCATCCTTCTTGGCATCTGTTTTGGCACCATCTGTTAAAAGTGAGAAGAAAGTAAGATCAATCCTTGAAGGTTTGTGCGACAGTGCCAACAGTACATATTGGAAAACTGAAGATGAAGTGGGAGGAGGGATGGTTGGTCTTGGAGGAGATTCTGATGCATACCCATATGTCTCCTTCACAATCAATCTTGCTTAA 1911 45.84 MPYTSIPLNFDFSFTLTFSPFPSPCLTLLPRHRLSLFSAAVSLRSAPPPLSGQRRRLSPVSAVASLRSAPSPPSVQRRRRPPTGILSISIYDVKRAASMFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEILVNKAVMASIYWMVSLPVQGSASSLWNRLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLLKSNSFVEGVSQKIRRQIEELERVSGVESNVLTVDGVPVDSYLTRFVWDEAKYPTMSPLRDIVDSIHSQVAKIEDDLKIRVAEYYNVRSQLNAINRKQSGSLAVRDISNLVKPEDIITSEHLATLLVIVPKYSQKEWLSSYETLTSYVVPRSSKKLYEDNEYALYTVTLFSRVADNFKTSAREKGFQIREFEYSPEAQESRKQELEKLVQDQESLRSSLLQWSYASYAEVFISWMHFCAVRVFAESILRYGLPPSFLASVLAPSVKSEKKVRSILEGLCDSANSTYWKTEDEVGGGMVGLGGDSDAYPYVSFTINLA 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8880503 8889538 + CmPI595203_01g007840.1 Cmu01g0784 406290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0784 636 CDD S1_RNAPII_Rpb7 179 254 - -
Cmu01g0784 636 Gene3D - 98 178 IPR036898 -
Cmu01g0784 636 Gene3D - 423 511 - -
Cmu01g0784 636 Gene3D - 179 265 IPR012340 -
Cmu01g0784 636 SUPERFAMILY Vacuolar ATP synthase subunit C 261 635 IPR036132 GO:0015078(InterPro)|GO:0033180(InterPro)|GO:1902600(InterPro)
Cmu01g0784 636 SUPERFAMILY Nucleic acid-binding proteins 176 257 IPR012340 -
Cmu01g0784 636 CDD RNAP_II_Rpb7_N 100 179 - -
Cmu01g0784 636 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 261 635 IPR004907 GO:0000221(PANTHER)|GO:0033180(InterPro)|GO:0046961(InterPro)|GO:0046961(PANTHER)|GO:1902600(InterPro)
Cmu01g0784 636 Pfam V-ATPase subunit C 265 629 IPR004907 GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cmu01g0784 636 Pfam S1 RNA binding domain 177 254 IPR003029 GO:0003676(InterPro)
Cmu01g0784 636 FunFam DNA-directed RNA polymerase II subunit RPB7 179 264 - -
Cmu01g0784 636 Pfam SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 106 162 IPR005576 GO:0006351(InterPro)
Cmu01g0784 636 SUPERFAMILY N-terminal, heterodimerisation domain of RBP7 (RpoE) 99 176 IPR036898 -
Cmu01g0784 636 CDD V-ATPase_C 265 633 IPR004907 GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cmu01g0784 636 MobiDBLite consensus disorder prediction 61 80 - -
Cmu01g0784 636 Gene3D Vacuolar atp synthase subunit c; domain 1 266 594 - -
Cmu01g0784 636 FunFam DNA-directed RNA polymerase II subunit RPB7 99 178 - -
Cmu01g0784 636 Gene3D - 301 572 - -
Cmu01g0784 636 FunFam V-type proton ATPase subunit C 423 511 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0784 Cmu-Chr1:8880503 Cmu05g0501 Cmu-Chr5:4230896 5.70E-13 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0784 K02148 - csv:101221574 706.442