Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0784 ATGCCCTACACTTCCATCCCTTTGAACTTCGATTTCAGTTTCACTCTCACCTTCTCGCCTTTTCCCTCTCCCTGCTTGACGCTGTTGCCGCGCCACCGTCTCTCTCTGTTCAGCGCCGCCGTCTCTCTCCGTTCAGCGCCGCCTCCTCTCTCCGGTCAGCGCCGTCGCCTCTCTCCGGTCAGCGCCGTCGCCTCTCTCCGGTCAGCGCCGTCGCCGCCCTCCGTTCAGCGCCGTCGCCGCCCTCCTACCGGTATTCTCTCGATCTCCATCTATGACGTAAAGAGAGCAGCCAGTATGTTCTTCCACATAGTTTTGGAGAGGAATATGCAGCTACATCCACGGCACTTTGGCCGTAACCTCCGTGAGAACCTTGTCTCAAAACTTATGAAAGATGTTGAAGGCACTTGCAGTGGCCGACATGGTTTTGTTGTGGCAATTACGGGAATTGAGAATATTGGGAAAGGGTTGATCCGTGATGGAACAGGTTTTGTCACTTTTCCTGTTAAGTACCAATGTGTCGTGTTTAGACCATTCAAGGGAGAAATTTTAGAAGCTGTTGTTACTATGGTAAATAAGATGGGTTTCTTTGCTGAAGCTGGACCTGTTCAGATTTTTGTTTCAAACCATTTGATACCAGATGATATGGAGTTCCAGTCTGGAGATGTGCCAAACTATACCACCTCGGATGGATCAGTTAAGATTCAGAAAGACAGTGAAGTTCGATTAAAGATAATTGGGACTCGAGTAGATGCAACTGAAATTCTTGTAAACAAAGCTGTAATGGCGAGCATATACTGGATGGTCTCCTTACCTGTTCAAGGCTCCGCTTCTTCCCTTTGGAATCGTCTCCAAGAACAAATCTCCAAGCACTCTTTCGATACTCCTCTTTACAGATTCAATATTCCTAATCTCCGTGTTGGAACGCTCGATTCGCTCCTTTCTCTCAGCGATGATCTTCTGAAGTCGAACAGCTTTGTGGAAGGAGTTTCTCAGAAGATCAGACGGCAGATCGAGGAACTGGAGAGGGTTTCAGGTGTGGAGAGCAATGTTTTGACGGTTGATGGAGTCCCCGTTGATTCGTATCTTACTAGGTTTGTGTGGGATGAAGCCAAGTACCCGACAATGTCGCCTCTGAGAGACATTGTGGATAGCATTCACAGTCAAGTGGCCAAGATTGAGGATGACCTCAAGATTCGTGTTGCTGAGTACTATAATGTGCGGAGTCAACTTAATGCCATTAACAGAAAGCAAAGTGGAAGCTTGGCAGTCCGTGATATTTCCAATCTTGTAAAACCAGAGGACATAATTACCTCAGAACATCTAGCAACCCTTCTAGTGATTGTTCCCAAGTACTCTCAGAAAGAGTGGCTATCTAGCTATGAAACACTGACTAGCTATGTGGTTCCCAGGTCTTCGAAGAAATTATACGAGGATAATGAATATGCCCTTTACACTGTAACACTCTTTAGTCGCGTTGCAGACAATTTCAAAACAAGTGCACGTGAAAAAGGGTTCCAGATTCGTGAATTTGAATATAGTCCAGAAGCACAAGAGAGTAGAAAACAGGAGTTAGAAAAGTTGGTGCAGGACCAGGAAAGTTTGAGAAGTTCTTTATTGCAGTGGTCCTACGCTAGTTATGCTGAGGTTTTCATTTCCTGGATGCACTTCTGTGCCGTACGTGTGTTTGCTGAGAGTATCCTGAGATATGGTTTACCACCATCCTTCTTGGCATCTGTTTTGGCACCATCTGTTAAAAGTGAGAAGAAAGTAAGATCAATCCTTGAAGGTTTGTGCGACAGTGCCAACAGTACATATTGGAAAACTGAAGATGAAGTGGGAGGAGGGATGGTTGGTCTTGGAGGAGATTCTGATGCATACCCATATGTCTCCTTCACAATCAATCTTGCTTAA 1911 45.84 MPYTSIPLNFDFSFTLTFSPFPSPCLTLLPRHRLSLFSAAVSLRSAPPPLSGQRRRLSPVSAVASLRSAPSPPSVQRRRRPPTGILSISIYDVKRAASMFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEILVNKAVMASIYWMVSLPVQGSASSLWNRLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLLKSNSFVEGVSQKIRRQIEELERVSGVESNVLTVDGVPVDSYLTRFVWDEAKYPTMSPLRDIVDSIHSQVAKIEDDLKIRVAEYYNVRSQLNAINRKQSGSLAVRDISNLVKPEDIITSEHLATLLVIVPKYSQKEWLSSYETLTSYVVPRSSKKLYEDNEYALYTVTLFSRVADNFKTSAREKGFQIREFEYSPEAQESRKQELEKLVQDQESLRSSLLQWSYASYAEVFISWMHFCAVRVFAESILRYGLPPSFLASVLAPSVKSEKKVRSILEGLCDSANSTYWKTEDEVGGGMVGLGGDSDAYPYVSFTINLA 636
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 8880503 8889538 + CmPI595203_01g007840.1 Cmu01g0784 406290

Annotation


Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0784 636 CDD S1_RNAPII_Rpb7 179 254 - -
Cmu01g0784 636 Gene3D - 98 178 IPR036898 -
Cmu01g0784 636 Gene3D - 423 511 - -
Cmu01g0784 636 Gene3D - 179 265 IPR012340 -
Cmu01g0784 636 SUPERFAMILY Vacuolar ATP synthase subunit C 261 635 IPR036132 GO:0015078(InterPro)|GO:0033180(InterPro)|GO:1902600(InterPro)
Cmu01g0784 636 SUPERFAMILY Nucleic acid-binding proteins 176 257 IPR012340 -
Cmu01g0784 636 CDD RNAP_II_Rpb7_N 100 179 - -
Cmu01g0784 636 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 261 635 IPR004907 GO:0000221(PANTHER)|GO:0033180(InterPro)|GO:0046961(InterPro)|GO:0046961(PANTHER)|GO:1902600(InterPro)
Cmu01g0784 636 Pfam V-ATPase subunit C 265 629 IPR004907 GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cmu01g0784 636 Pfam S1 RNA binding domain 177 254 IPR003029 GO:0003676(InterPro)
Cmu01g0784 636 FunFam DNA-directed RNA polymerase II subunit RPB7 179 264 - -
Cmu01g0784 636 Pfam SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 106 162 IPR005576 GO:0006351(InterPro)
Cmu01g0784 636 SUPERFAMILY N-terminal, heterodimerisation domain of RBP7 (RpoE) 99 176 IPR036898 -
Cmu01g0784 636 CDD V-ATPase_C 265 633 IPR004907 GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cmu01g0784 636 MobiDBLite consensus disorder prediction 61 80 - -
Cmu01g0784 636 Gene3D Vacuolar atp synthase subunit c; domain 1 266 594 - -
Cmu01g0784 636 FunFam DNA-directed RNA polymerase II subunit RPB7 99 178 - -
Cmu01g0784 636 Gene3D - 301 572 - -
Cmu01g0784 636 FunFam V-type proton ATPase subunit C 423 511 - -
       

Pathway


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0784 K02148 - - csv:101221574 706.442
       

Dupl-types


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0784 Cmu-Chr1:8880503 Cmu05g0501 Cmu-Chr5:4230896 5.70E-13 transposed
       

Syn-Families


Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu08g1600 . 1 998 Primary Pumps ATPases(2) AT1G10130 83.3 0.0e+00 1629.4
Cmu02g2073 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.6 0.0e+00 1345.9
Cmu08g1402 . 1 802 Primary Pumps ATPases(2) AT2G28520 63.2 4.1e-298 1020.8
Cmu02g0505 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.8 1.2e-292 1002.7
Cmu02g0505 . 6 818 Primary Pumps ATPases(2) AT2G21410 75.7 0.0e+00 1233.8
Cmu08g1402 . 1 807 Primary Pumps ATPases(2) AT2G21410 73.5 0.0e+00 1195.3
Cmu02g2073 . 9 818 Primary Pumps ATPases(2) AT2G21410 62.6 2.9e-299 1024.6
Cmu02g0505 . 8 818 Primary Pumps ATPases(2) AT4G39080 76.9 0.0e+00 1235.7
Cmu08g1402 . 1 807 Primary Pumps ATPases(2) AT4G39080 74.2 0.0e+00 1192.6
Cmu02g2073 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.5 3.2e-298 1021.1
Cmu08g1392 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Cmu08g1393 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Cmu11g1570 . 90 227 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Cmu08g1392 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.4e-66 249.6
Cmu08g1393 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.4e-66 249.6
Cmu11g1570 . 64 227 Primary Pumps ATPases(2) AT1G75630 80.3 3.2e-66 248.4
Cmu08g1392 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.4e-74 274.2
Cmu08g1393 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.4e-74 274.2
Cmu11g1570 . 65 227 Primary Pumps ATPases(2) AT2G16510 99.4 4.4e-74 274.2
Cmu11g1570 . 63 184 Primary Pumps ATPases(2) AT1G19910 99.2 5.4e-53 203.8
Cmu08g1392 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Cmu08g1393 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Cmu05g1746 . 4 180 Primary Pumps ATPases(2) AT2G25610 82.5 2.4e-70 262.3
Cmu08g1238 . 4 180 Primary Pumps ATPases(2) AT2G25610 84.2 3.1e-70 261.9
Cmu08g1392 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 4.0e-60 227.6
Cmu08g1393 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 4.0e-60 227.6
Cmu11g1570 . 90 227 Primary Pumps ATPases(2) AT4G38920 99.3 4.0e-60 227.6
Cmu05g1746 . 11 180 Primary Pumps ATPases(2) AT4G32530 77.5 6.2e-73 270.8
Cmu08g1238 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.3 1.5e-71 266.2
Cmu03g0800 . 1 1065 Primary Pumps ATPases(2) AT1G07810 80.6 0.0e+00 1672.1
Cmu03g0800 . 1 1065 Primary Pumps ATPases(2) AT1G07670 80.3 0.0e+00 1671.8
Cmu08g1600 . 1 998 Primary Pumps ATPases(2) AT1G10130 83.3 0.0e+00 1629.4
Cmu03g0800 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.7 0.0e+00 1320.8
Cmu03g2322 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.1 3.8e-57 217.6
Cmu02g0413 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.1 4.5e-268 920.2
Cmu10g2755 . 62 169 Primary Pumps ATPases(2) AT3G01390 80.6 3.8e-37 151.0
Cmu01g0784 . 261 636 Primary Pumps ATPases(2) AT1G12840 83.0 1.0e-179 626.3
Cmu09g2120 . 1021 1281 Primary Pumps ATPases(2) AT3G58730 82.4 7.9e-118 420.2
Cmu10g2379 . 67 519 Primary Pumps ATPases(2) AT3G42050 77.7 1.9e-201 698.7
Cmu08g1392 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.4e-74 274.2
Cmu08g1393 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.4e-74 274.2
Cmu11g1570 . 65 227 Primary Pumps ATPases(2) AT2G16510 99.4 4.4e-74 274.2
Cmu02g0413 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.9 2.9e-270 927.5
Cmu05g1461 . 1 182 Primary Pumps ATPases(2) AT1G64200 73.0 1.7e-64 242.7
Cmu02g0413 . 9 488 Primary Pumps ATPases(2) AT1G20260 95.8 9.4e-266 912.5
Cmu02g2073 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.6 0.0e+00 1345.9
Cmu08g1402 . 1 802 Primary Pumps ATPases(2) AT2G28520 63.2 4.1e-298 1020.8
Cmu02g0505 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.8 1.2e-292 1002.7
Cmu10g2246 . 102 443 Primary Pumps ATPases(2) AT3G28715 92.7 2.8e-187 651.4
Cmu05g1461 . 1 229 Primary Pumps ATPases(2) AT4G11150 77.0 2.8e-90 328.6
Cmu09g0160 . 1 623 Primary Pumps ATPases(2) AT1G78900 93.3 0.0e+00 1171.4
Cmu02g0413 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.1 4.5e-268 920.2
Cmu02g0413 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.9 2.9e-270 927.5
Cmu02g0413 . 9 488 Primary Pumps ATPases(2) AT1G20260 95.8 9.4e-266 912.5
Cmu01g0784 . 261 636 Primary Pumps ATPases(2) AT1G12840 83.0 1.0e-179 626.3
Cmu09g2120 . 1021 1281 Primary Pumps ATPases(2) AT3G58730 82.4 7.9e-118 420.2
Cmu05g1461 . 1 229 Primary Pumps ATPases(2) AT4G11150 77.0 2.8e-90 328.6
Cmu05g1461 . 1 223 Primary Pumps ATPases(2) AT3G08560 68.6 8.8e-76 280.4
Cmu05g1461 . 1 182 Primary Pumps ATPases(2) AT1G64200 73.0 1.7e-64 242.7
Cmu03g2322 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.1 3.8e-57 217.6
Cmu10g2755 . 62 169 Primary Pumps ATPases(2) AT3G01390 80.6 3.8e-37 151.0
Cmu10g2379 . 67 519 Primary Pumps ATPases(2) AT3G42050 77.7 1.9e-201 698.7
Cmu02g2073 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.6 0.0e+00 1345.9
Cmu08g1402 . 1 802 Primary Pumps ATPases(2) AT2G28520 63.2 4.1e-298 1020.8
Cmu02g0505 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.8 1.2e-292 1002.7
Cmu02g0505 . 6 818 Primary Pumps ATPases(2) AT2G21410 75.7 0.0e+00 1233.8
Cmu08g1402 . 1 807 Primary Pumps ATPases(2) AT2G21410 73.5 0.0e+00 1195.3
Cmu02g2073 . 9 818 Primary Pumps ATPases(2) AT2G21410 62.6 2.9e-299 1024.6
Cmu02g0505 . 8 818 Primary Pumps ATPases(2) AT4G39080 76.9 0.0e+00 1235.7
Cmu08g1402 . 1 807 Primary Pumps ATPases(2) AT4G39080 74.2 0.0e+00 1192.6
Cmu02g2073 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.5 3.2e-298 1021.1
Cmu08g1392 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Cmu08g1393 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Cmu11g1570 . 90 227 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Cmu11g1570 . 63 184 Primary Pumps ATPases(2) AT1G19910 99.2 5.4e-53 203.8
Cmu08g1392 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Cmu08g1393 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Cmu08g1392 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 4.0e-60 227.6
Cmu08g1393 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 4.0e-60 227.6
Cmu11g1570 . 90 227 Primary Pumps ATPases(2) AT4G38920 99.3 4.0e-60 227.6
Cmu08g1392 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.4e-66 249.6
Cmu08g1393 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.4e-66 249.6
Cmu11g1570 . 64 227 Primary Pumps ATPases(2) AT1G75630 80.3 3.2e-66 248.4
Cmu08g1392 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.4e-74 274.2
Cmu08g1393 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.4e-74 274.2
Cmu11g1570 . 65 227 Primary Pumps ATPases(2) AT2G16510 99.4 4.4e-74 274.2
Cmu05g1746 . 11 180 Primary Pumps ATPases(2) AT4G32530 77.5 6.2e-73 270.8
Cmu08g1238 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.3 1.5e-71 266.2
Cmu05g1746 . 4 180 Primary Pumps ATPases(2) AT2G25610 82.5 2.4e-70 262.3
Cmu08g1238 . 4 180 Primary Pumps ATPases(2) AT2G25610 84.2 3.1e-70 261.9
Cmu10g2246 . 102 443 Primary Pumps ATPases(2) AT3G28710 95.0 2.4e-194 674.9
Cmu10g2246 . 102 443 Primary Pumps ATPases(2) AT3G28715 92.7 2.8e-187 651.4
Cmu03g0800 . 1 1065 Primary Pumps ATPases(2) AT1G07810 80.6 0.0e+00 1672.1
Cmu03g0800 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.7 0.0e+00 1320.8
Cmu08g1600 . 1 998 Primary Pumps ATPases(2) AT1G10130 83.3 0.0e+00 1629.4
Cmu03g0800 . 1 1065 Primary Pumps ATPases(2) AT1G07670 80.3 0.0e+00 1671.8
       

Syn-Orthogroups


Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007861 1 1 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 36