Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0800 ATGAAAAGACAGCCAAAACGACACCTTCTTACAACTGGTTGGAGTGTGTTTGTTAGTGCCAAAAGATTGGTTGCTGGGGATTCTGTACTTTTTATATGGAATGAAAAAAATCAGCTTCTTTTGGGTATACGCCGTGCCACAAGACCACAAACTGTGATGCCCTCTTCTGTTTTGTCAAGTGATAGCATGCACATTGGACTCCTTGCTGCTGCAGCTCATGCTGCTGCAACGAATAGCTGTTTCACAGTGTTCTACAACCCCAGGGCTAGCCCATCAGAGTTTGTCATCCCTCTGACAAAATATGTTAAAGCTGTATTTCATACCCGTGTTTCAGTAGGAATGCGTTTTCGGATGCTTTTTGAGACTGAAGAGTCAAGTGTTCGAAGGTACATGGGTACTATAACTGGAATAAGTGATCTTGACCCTGTTCGCTGGCCGAATTCTCATTGGCGTTCTGTCAAGGTAGGGTGGGATGAGTCAACAGCTGGGGAGAGGCAGCCAAGGGTATCGTTGTGGGAAATTGAGCCTTTGACTACATTTCCTATGTATCCATCTCTGTTTCCACTTAGACTGAAACGTCCATGGCATCCTGGAGTCTCTTCTGTTCATGATAACAGAGATGATGCATCTAATGGCTTAATGTGGCTTCGGGGAGGAGTTGGGGAACAGGGTCTACACTCACTGAATTTGCAATCTGTGGGCCCCCTGCCCTGGTTGCAGCAGAGACTTGACTCTTCCATGTTTGGAAATGATCATAACCAACAGTATCAAGCCATGTTGGCAGCTGGAATGCCAAACCTTGGAGGTGTTGATATGCTGAGACAGCAAATTATGCATCTTCAACAACCTTTCCAATATATTCAACAGGCAGGCTTCCATAACTCTCTGTTGCAGATGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAATTGGTTCAACAATCTATGCCTCAGAACATCCTGCAGGCACCAAACCAAGTTTTGGCAGAAAATCTACCTCAACACATTCTCCAGCAAACTCTACAAAATCAACCTGAGGATCTGCCAAACCAGCAACAGCATACTTATCATGATTCCATTCAGGTTCAAAGCAATCAATTTCATCAGGGTGGGCATTCAAATGTGCCATCACCCACATTTCCCAGAACAGACCTTATGGATTCCAACACAAATTACTCAGATTCCATTACCTCTAGAAGGAATATACTTGCATCATCATGTGCTGAAGGGACGGGAAATCTTTCCAATATCTACAGAAGTGGGCAGTCAATCCTAACTGAGCATTTACCTCAACAATCTCCTGTTTCTAAGAATGCTCATTCACAGGTTGATGCTCACTCAAACTCAATGTCATTTCCACCATTTTCTGGTAGAGACTCAATTCTGGAGCTGGGAAATTGTAATTCAGATTCTCCAAGTCCTACACTTTTTGGTGTAAATATTGATTCATCTGGACTTCTACTTCCCTCTAATGTGCCCACTTACGCTTCTCCATCAATTGGTCCTGATTCATCCTCAATGCCACTGGGAGATTCTGGATTTCAGAATTCTCTGTACAGTTGTGTCCAAGACTCTTCTGAGTTGTTGCACAACTCAGGGCAAGTTGATCCATCGAATCCAACTCGGACGTTTGTTAAGGTTTACAAATCTGGATCTGTTGGGCGCTCACTAGACATCTCCCGGTTCAGCAGCTATCAGGAGCTGCGAGAGGAGCTGGCTCAGATGTTTGGAATCGAGGGACAGTTGGAAGACCCTCATAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAATGATGTACTTCTCCTTGGAGATGACCCTTGGGAGGCATTTGTGAATAATGTCGGGTATATCAAGATACTTTCTCCCCGGGACTTTCAGAAACTAGGGGAACAGGCAATCGAGTCCTTTAACCCTATCGTTGGTCAGCGACTTACCAGTGGTGGCAATGAAGCTGGAAATGTTTCAGGACTACCATCTGTTGGTTCGCTAGAATATTGA 2016 45.04 MKRQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRATRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGVSSVHDNRDDASNGLMWLRGGVGEQGLHSLNLQSVGPLPWLQQRLDSSMFGNDHNQQYQAMLAAGMPNLGGVDMLRQQIMHLQQPFQYIQQAGFHNSLLQMQQQQQQQQQQQQQQQLVQQSMPQNILQAPNQVLAENLPQHILQQTLQNQPEDLPNQQQHTYHDSIQVQSNQFHQGGHSNVPSPTFPRTDLMDSNTNYSDSITSRRNILASSCAEGTGNLSNIYRSGQSILTEHLPQQSPVSKNAHSQVDAHSNSMSFPPFSGRDSILELGNCNSDSPSPTLFGVNIDSSGLLLPSNVPTYASPSIGPDSSSMPLGDSGFQNSLYSCVQDSSELLHNSGQVDPSNPTRTFVKVYKSGSVGRSLDISRFSSYQELREELAQMFGIEGQLEDPHRSGWQLVFVDRENDVLLLGDDPWEAFVNNVGYIKILSPRDFQKLGEQAIESFNPIVGQRLTSGGNEAGNVSGLPSVGSLEY 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9109490 9123428 - CmPI595203_01g008000.1 Cmu01g0800 406306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0800 671 Pfam Auxin response factor 71 153 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cmu01g0800 671 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 3 637 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cmu01g0800 671 Pfam B3 DNA binding domain 2 46 IPR003340 GO:0003677(InterPro)
Cmu01g0800 671 ProSiteProfiles PB1 domain profile. 546 630 IPR053793 -
Cmu01g0800 671 Gene3D - 542 635 - -
Cmu01g0800 671 Gene3D - 109 181 - -
Cmu01g0800 671 Gene3D - 1 47 IPR015300 -
Cmu01g0800 671 SUPERFAMILY CAD & PB1 domains 538 620 - -
Cmu01g0800 671 Pfam AUX/IAA family 541 631 IPR033389 -
Cmu01g0800 671 SUPERFAMILY DNA-binding pseudobarrel domain 4 74 IPR015300 -
Cmu01g0800 671 ProSiteProfiles B3 DNA-binding domain profile. 1 47 IPR003340 GO:0003677(InterPro)
Cmu01g0800 671 FunFam Auxin response factor 541 635 - -
Cmu01g0800 671 FunFam Auxin response factor 109 181 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0800 Cmu-Chr1:9109490 Cmu03g1247 Cmu-Chr3:7328950 9.30E-163 dispersed
Cmu01g0800 Cmu-Chr1:9109490 Cmu01g2432 Cmu-Chr1:36248281 5.40E-171 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5493 PF02309 AUX_IAA 2.50E-08 CL0072 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0800 K14486 - csv:101208098 1267.29