Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0803 ATGGTGGCACATGCCTGCTGTCAAATCAAAAGGGGAATGGAGGGGGAGATGGGAGAGCGCGGTGGGGTTGTGAGTGATTGCGTTGGGTTTAGGCAGCGGAGGAATCTTCTTAATTATTGGGGAAAGCTTGATATGAAGCTTTCAACATCAGGGTTTGGTCAGCAGGATCACGAAGGAGGGGAAAAGAAATGCTTGAATTCAGAGCTATGGCATGCATGCGCGGGGCCCCTTGTGTCCCTCCCAACTGCTGGGACTCGGGTTGTCTACTTCCCTCAGGGTCACAGCGAACAGGTTGCTGCCACGACCAATAAAGAAGTTGATGGGCACATACCCAATTACCCGAACCTACCTCCCCAGTTGATATGTCAACTTCACAACGTTACAATGCATGCAGATGTGGAAACGGATGAAGTATATGCCCAGATGACATTACAGCCTCTGACTGCACAAGAGCAAAAGGATACATTTCTACCCATGGAATTGGGGATTCCTAGTAGACAGCCAACAAATTACTTTTGCAAAACGTTGACAGCAAGTGATACAAGCACCCATGGAGGATTTTCTGTACCTCGTCGTGCTGCTGAGAAAGTTTTTCCTCCACTGGATTTTTCACAACAGCCACCAGCACAAGAGCTGATTGCAAGGGACCTTCATGATGTCGAATGGAAGTTTAGGCATATTTTTCGAGTTTCCTTTAGAACCTTCAGGCTTTGTGGCATAAGTTCATTGCGAGTAAGTATGAGTTACATTCCAATGGATAGGGTTCTAGTACAGATTCCAAAAGCACCTTTAGGAACTGTTGGGAAGCAGTCTTTCTCTTTATGGAGATTAGAAGAGGATGATGATTCATCCAAATCGTTCCTCCCAAATCTATTGAAATTCCTACCACTATTGCCCATGTCATCTCCACCATATGGTTCGTATAATATCAATGCTTCGTGCATTGCTTTCTATGGCAAAACGTTCGAGAGGCTAATTGGTTTGAACCTGATTTACTGGAAGCAGAGCAATGGTTGCAACGGGGAAAAGTGCGGTTGA 1038 45.76 MVAHACCQIKRGMEGEMGERGGVVSDCVGFRQRRNLLNYWGKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNKEVDGHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTAQEQKDTFLPMELGIPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRVSFRTFRLCGISSLRVSMSYIPMDRVLVQIPKAPLGTVGKQSFSLWRLEEDDDSSKSFLPNLLKFLPLLPMSSPPYGSYNINASCIAFYGKTFERLIGLNLIYWKQSNGCNGEKCG 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9130476 9135175 - CmPI595203_01g008030.1 Cmu01g0803 406309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0803 345 CDD B3_DNA 171 239 IPR003340 GO:0003677(InterPro)
Cmu01g0803 345 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 64 231 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cmu01g0803 345 Gene3D - 170 264 IPR015300 -
Cmu01g0803 345 SUPERFAMILY DNA-binding pseudobarrel domain 156 231 IPR015300 -
Cmu01g0803 345 SMART B3_2 172 251 IPR003340 GO:0003677(InterPro)
Cmu01g0803 345 Pfam B3 DNA binding domain 172 234 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0803 Cmu-Chr1:9130476 Cmu03g1247 Cmu-Chr3:7328950 1.60E-89 dispersed
Cmu01g0803 Cmu-Chr1:9130476 Cmu01g2432 Cmu-Chr1:36248281 2.20E-91 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0803 K14486 - csv:101208098 388.267