Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0824 ATGTCGCCATCTCTTCCACTTCACTTCCTCTTCACTGTTGCAGCAGCTCTCACATCTCCGGTTACCTCCCATTTCTCTTCTACAACCTCCTCGCCGTCGCCGGAATCCGCCCCGTCACTCTCCGAGTGGAGATCTGCTCGTGCCACCTACTACGCCGCCTCCGACCCTCGCGATGCGGTGGGCGGAGCCTGTGGATATGGCGATTTAGTGAAGGCAGGCTATGGCATGGCGACAGTGGGACTCAGCGAGTCGCTATTTGAACGCGGACAGATCTGCGGTGCCTGCTTTCAGCTCCGGTGTGTTGAGGACCTCCGGTGGTGTATTCCCGGTACCTCTATCATTGTCACTGTTACTAATTTCTGTGCGCCTAATTATGGCTTCACAGCTGAGGGCGGAGGCCATTGTAACCCTCCTAATAAGCATTTTGTGCTCCCTATTGAGGCGTTTGAGAAGATCGCTATCTGGAAGGCGGGAAACATGCCTGTTCAGTATCGGAGGATCAAATGCCGAAAGGAAGGGGGTATTCGGTATACGGTTTCTGGGTACGGCATCTACCTCTCAGTGTTGATAAGTAATGTTGCAGGCGCTGGAGATGTGAGTGCTGTAAAGATCAAGGGGTCGAGAACCGGTTGGCTTCCAATGGGTCGTAATTGGGGGCAAAACTGGCACATAAATGCTGATTTGAACCATCAAGCCCTTTCCTTCGAAGTCACCAGCAGTGATGGAGTAACAATTACATCCTACAATGTTGCTCCCAAGGATTGGAACTTTGGGCAGACTTTTGAAGGCAAGCAATTTGAATCTTGA 807 51.8 MSPSLPLHFLFTVAAALTSPVTSHFSSTTSSPSPESAPSLSEWRSARATYYAASDPRDAVGGACGYGDLVKAGYGMATVGLSESLFERGQICGACFQLRCVEDLRWCIPGTSIIVTVTNFCAPNYGFTAEGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRIKCRKEGGIRYTVSGYGIYLSVLISNVAGAGDVSAVKIKGSRTGWLPMGRNWGQNWHINADLNHQALSFEVTSSDGVTITSYNVAPKDWNFGQTFEGKQFES 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9658926 9663206 - CmPI595203_01g008240.1 Cmu01g0824 406330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0824 268 Pfam Expansin C-terminal domain 175 252 IPR007117 -
Cmu01g0824 268 PANTHER EXPANSIN-A15 20 266 IPR002963 GO:0009664(InterPro)
Cmu01g0824 268 PRINTS Expansin/Lol pI family signature 249 263 IPR007118 GO:0005576(InterPro)
Cmu01g0824 268 PRINTS Expansin/Lol pI family signature 211 225 IPR007118 GO:0005576(InterPro)
Cmu01g0824 268 PRINTS Expansin/Lol pI family signature 42 57 IPR007118 GO:0005576(InterPro)
Cmu01g0824 268 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576(InterPro)
Cmu01g0824 268 PRINTS Expansin/Lol pI family signature 82 100 IPR007118 GO:0005576(InterPro)
Cmu01g0824 268 PRINTS Expansin/Lol pI family signature 157 173 IPR007118 GO:0005576(InterPro)
Cmu01g0824 268 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 61 174 IPR007112 -
Cmu01g0824 268 SMART dpbb_1 78 164 IPR007112 -
Cmu01g0824 268 Gene3D - 27 170 IPR036908 -
Cmu01g0824 268 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 184 263 IPR007117 -
Cmu01g0824 268 SUPERFAMILY Barwin-like endoglucanases 42 192 IPR036908 -
Cmu01g0824 268 CDD DPBB_EXPA_N 42 169 - -
Cmu01g0824 268 Pfam Lytic transglycolase 79 164 IPR009009 -
Cmu01g0824 268 Gene3D - 175 266 IPR036749 -
Cmu01g0824 268 SUPERFAMILY PHL pollen allergen 171 263 IPR036749 -
Cmu01g0824 268 PRINTS Expansin signature 132 149 IPR002963 GO:0009664(InterPro)
Cmu01g0824 268 PRINTS Expansin signature 173 185 IPR002963 GO:0009664(InterPro)
Cmu01g0824 268 PRINTS Expansin signature 73 87 IPR002963 GO:0009664(InterPro)
Cmu01g0824 268 PRINTS Expansin signature 220 241 IPR002963 GO:0009664(InterPro)
Cmu01g0824 268 PRINTS Expansin signature 185 206 IPR002963 GO:0009664(InterPro)
Cmu01g0824 268 PRINTS Expansin signature 113 123 IPR002963 GO:0009664(InterPro)
Cmu01g0824 268 PRINTS Expansin signature 149 162 IPR002963 GO:0009664(InterPro)
Cmu01g0824 268 PRINTS Expansin signature 249 265 IPR002963 GO:0009664(InterPro)
Cmu01g0824 268 PRINTS Expansin signature 100 111 IPR002963 GO:0009664(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0824 Cmu-Chr1:9658926 Cmu02g2002 Cmu-Chr2:33783402 1.90E-74 dispersed
Cmu01g0824 Cmu-Chr1:9658926 Cmu03g0763 Cmu-Chr3:1825738 1.70E-75 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0824 - - - 0.0