Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0874 ATGAAGACGGAGAATGGAAGGAAACAAGGGGGAGGAACAGGAGCAGCGCCATGTGCAGCATGCAAGCTGCTGAGAAGAAGGTGTGGAGAGGAATGCGTATTTGCTCCATACTTTCCAGCAGACCAACCTCATAAGTTTGCCAATGTTCATAAGGTTTTTGGTGCTAGCAATGTCAACAAAATGCTCCAGGAGTTGCCAATTCACCAACGTGGAGATGCAGTGAGCAGTTTGGTGTATGAAGCAAATGCTCGAGTGCGCGACCCGGTGTACGGGTGCGTCGGAGCAATATCATCTCTGCAGCAGCAGATAGACGCCCTCCAAACTCAGCTGGCTTTGGCTCAAGCCGAGGTGGTGCACCTAAGGGTGCGTCAGACAGCACCATTTTCAAACTATGGGCTAAGCCCAACAAGCCCAAGTAATAGTGGGTCACCCTCATCAAGGCTCATGGGCTCACAATCCAGGCCCATGTTTGAGATGGATATGGTTGTGGACCAAGCCATGGGAGACTCAATGTGGTGA 519 51.25 MKTENGRKQGGGTGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVRQTAPFSNYGLSPTSPSNSGSPSSRLMGSQSRPMFEMDMVVDQAMGDSMW 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10699749 10703259 + CmPI595203_01g008740.1 Cmu01g0874 406380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0874 172 ProSiteProfiles LOB domain profile. 16 117 IPR004883 -
Cmu01g0874 172 MobiDBLite consensus disorder prediction 129 154 - -
Cmu01g0874 172 Coils Coil 96 123 - -
Cmu01g0874 172 MobiDBLite consensus disorder prediction 129 152 - -
Cmu01g0874 172 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 16 137 - -
Cmu01g0874 172 Pfam Lateral organ boundaries (LOB) domain 17 114 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0874 Cmu-Chr1:10699749 Cmu07g0502 Cmu-Chr7:5808766 1.50E-45 dispersed
Cmu01g0874 Cmu-Chr1:10699749 Cmu02g1848 Cmu-Chr2:32398445 3.50E-58 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5499 PF03195 LOB 2.50E-43 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0874 - - - 0.0