Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0935 ATGGCTGCTGGGACAGCTTTCTTGAGGCAATGTATAGCTACGACTACAAGAACATTGGTGACTGCGAAATTGAAACATTCCAGCAACCATTTCACGACTTTTCTCCTCCCACTTAGCACTCGCTCTCGAAGATTGACCATTCGTGCTGGTATCACAAACGATGAAGAAGTTGCTGCTAAAGCAGCTGCATCTGATGCAGACAGTGGAGCTCCAACCATATTTGACAAAATAATAGCCAAGGAAATTCCTTCGAACATTGTTTATGAGGATGATAAAGTCCTTGCATTCCGAGACATAAATCCACAGGCTCCTGTTCATGTATTAATCATTCCAAAGCTCAGAGATGGATTGACAGAGCTGGGAAAGGCTGAAGCAAGACATGGAGAGATACTGGGTCAGCTGCTGTATGCAGCCAAAATAGTGGCTGAAAAAGAGGGTATTGTTGAAGGATTTCGAGTAGTCATCAACAGTGGGGCAAGTGCTTGTCAATCTGTGTATCATCTTCACTTGCATGTCCTGGGAGGGAGACAGATGAAATGGCCTCCAGGTTGA 552 44.75 MAAGTAFLRQCIATTTRTLVTAKLKHSSNHFTTFLLPLSTRSRRLTIRAGITNDEEVAAKAAASDADSGAPTIFDKIIAKEIPSNIVYEDDKVLAFRDINPQAPVHVLIIPKLRDGLTELGKAEARHGEILGQLLYAAKIVAEKEGIVEGFRVVINSGASACQSVYHLHLHVLGGRQMKWPPG 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12820425 12824767 + CmPI595203_01g009350.1 Cmu01g0935 406441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0935 183 Pfam HIT domain 80 177 IPR011146 GO:0003824(InterPro)
Cmu01g0935 183 PANTHER HISTIDINE TRIAD HIT PROTEIN 52 183 IPR001310 GO:0005737(PANTHER)|GO:0006790(PANTHER)|GO:0009150(PANTHER)|GO:0016787(PANTHER)|GO:0047627(PANTHER)
Cmu01g0935 183 Gene3D - 53 183 IPR036265 -
Cmu01g0935 183 ProSitePatterns HIT domain signature. 156 174 IPR019808 -
Cmu01g0935 183 ProSiteProfiles HIT domain profile. 73 183 IPR011146 GO:0003824(InterPro)
Cmu01g0935 183 CDD PKCI_related 71 175 - -
Cmu01g0935 183 FunFam Histidine triad nucleotide-binding protein 1 53 183 - -
Cmu01g0935 183 PRINTS Histidine triad family signature 94 112 IPR001310 -
Cmu01g0935 183 PRINTS Histidine triad family signature 163 173 IPR001310 -
Cmu01g0935 183 PRINTS Histidine triad family signature 73 89 IPR001310 -
Cmu01g0935 183 SUPERFAMILY HIT-like 71 182 IPR036265 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0935 Cmu-Chr1:12820425 Cmu10g2429 Cmu-Chr10:30714727 4.30E-46 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0935 - - - 0.0