Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0940 ATGGCTCTGCGGGACTTCCTCTTCCTGTTTTTCTTCTTGATCTTTGATTGTATTCCATTTACTCGTGCTCTTACTGATGCTTCTGATGTTCAAGCTTTGCAAGTTATATACACCTCATTGAACAGTCCTCCTCAGCTGACTGGTTGGATTGGTAATGGAGGCGATCCATGTGTAGAGTCATGGAAAGGGGTGACTTGTGAAGGATCTGCTGTTGTTTCCATTGAGATTTCTGGGTTAGGGCTGAATGGAACGATGGGTTATGCGCTCTCAAGTTTTTTGTCATTGGAAAAGCTTGATATGAGCGACAACAATATTCATGACACGATTCCTTACCAATTGCCGCCGAACCTCACGAGCCTAAATATGGCAAAAAACAGCTTAAGTGGTAATCTTCCTTATTCCTTTTCCACCATGGCTTCTCTCAATTATTTGAATATGAGCCACAATTTGCTATCTCAGGCGATAGGAGATGTTTTCACCAATCTTACTACCCTGGGGACCTTGGACCTTTCTTTCAACAACTTTACTGGGGATCTTCCCAAGTCCTTGGGAACTTTATCCAATGTTTCTTCCTTGTTTTTGCAGAACAACCAATTGACTGGCTCTCTCAATATTCTTATCGATTTGCCTCTGACCACTCTAAATGTAGCAAATAATAATTTCAGTGGATGGATACCTCAAGAACTGAAGTCGGTTGAAAATTTCATGTATGATGGAAATTCATTTGACCATAGTCCTGCACCTCCTCCACCACCTTTTACTCCACCTCCTCCTGGTAGATCTCGTAGTAGCCCCAGACATCCTGGGTCTAGCGGTGGCACCCATACTGCCCCAAGTTCTGATGGGAGTTCATCCCACTCAAACAAAGGCTTGCCAGTTTTGGCTATAGTGGGGATAATTTTGGGTGCTATAATTTTTGTCCTCATTGTGTTAGTTGCTTTTGCTGTCTGCATCCAGAAGAGAAAACGAAAGAACATTGGTCTTCGAGCTTCCAGTGGAAGGCTGTCTGTTGGCACCAGTGTGAATGCTGAGGTGCAAGAGCATCGGGTGAAAAGTGTTGCTGCTGTTGCCGATATTAAGCCTCTTCCTGCAGAGAAAATGAATCCTGAGAGGTTGCCGGCGAAAAATGGATCGGTGAAAAGAATAAAGTCCCCTATTACTGCTACTTCATACACCGTTGCTTCCCTTCAAACTGCAACAAATAGTTTTAGCCAAGAATGCATAGTTGGTGAAGGTTCTCTTGGTCGGGTTTACAAAGCTGACTTTCCTAACGGGAAGATAATGGCGATTAAGAAAATCGATAATGCAGCGCTGTCACTACAGGAAGAAGACAATTTTCTTGAAGCAGTTTCAAACATGTCAAGGTTGAGGCATACAAACATTGTCACACTAAATGGTTATTGTGCAGAGCACGGCCAGCGTCTTCTAGTTTATGAGTTCATTGGAAATGGAAGTTTACATGACATGCTGCATTTTGCTGAAGAAAGTAGTAAGACACTGACTTGGAATGCACGTGTCCGGGTAGCACTTGGAACTGCTAGAGCTTTAGAATACTTGCATGAGGTTTGCTTGCCTTCTGTTGTACATAGAAACTTGAAGACTGCAAACATATTACTTGATGAAGATCTCAACCCCCATTTGTCAGATTGTGGTTTGGCTGCTTTAACACCCAACACAGAGCGGCAGATTTCTACTCGGATGGTTGGTTCATTTGGCTATAGTGCTCCGGAATTTGCCTTGTCAGGAATATACACTGTCAAAAGTGATGTGTACAGCTTTGGGGTGGTGATGTTGGAGCTCTTGACTGGCCGAAAGCCGCTTGACAGTTCTAGGGTGAGATCAGAGCAGTCACTTGTGAGATGGGCTACTCCCCAACTACATGATATCGATGCCTTAGCAAAAATGGTAGATCCTACTTTGAACGGAATGTACCCTGCGAAATCTCTGTCCCGCTTTGCTGACATCATTGCTCTCTGTGTTCAGCCTGAGCCTGAATTTCGACCTCCCATGTCCGAAGTAGTACAAGCACTGGTGCGTTTAGTGCAAAGAGCGAGTGTGGTAAAAAGGCATTCGAGCGACGAGACAGGTTTCAGTTACAGAACGCCTGAGCACGATGCAGTTGAGTTGCCATTTTGA 2136 44.19 MALRDFLFLFFFLIFDCIPFTRALTDASDVQALQVIYTSLNSPPQLTGWIGNGGDPCVESWKGVTCEGSAVVSIEISGLGLNGTMGYALSSFLSLEKLDMSDNNIHDTIPYQLPPNLTSLNMAKNSLSGNLPYSFSTMASLNYLNMSHNLLSQAIGDVFTNLTTLGTLDLSFNNFTGDLPKSLGTLSNVSSLFLQNNQLTGSLNILIDLPLTTLNVANNNFSGWIPQELKSVENFMYDGNSFDHSPAPPPPPFTPPPPGRSRSSPRHPGSSGGTHTAPSSDGSSSHSNKGLPVLAIVGIILGAIIFVLIVLVAFAVCIQKRKRKNIGLRASSGRLSVGTSVNAEVQEHRVKSVAAVADIKPLPAEKMNPERLPAKNGSVKRIKSPITATSYTVASLQTATNSFSQECIVGEGSLGRVYKADFPNGKIMAIKKIDNAALSLQEEDNFLEAVSNMSRLRHTNIVTLNGYCAEHGQRLLVYEFIGNGSLHDMLHFAEESSKTLTWNARVRVALGTARALEYLHEVCLPSVVHRNLKTANILLDEDLNPHLSDCGLAALTPNTERQISTRMVGSFGYSAPEFALSGIYTVKSDVYSFGVVMLELLTGRKPLDSSRVRSEQSLVRWATPQLHDIDALAKMVDPTLNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRHSSDETGFSYRTPEHDAVELPF 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12894479 12899694 - CmPI595203_01g009400.1 Cmu01g0940 406446

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0940 711 SUPERFAMILY Protein kinase-like (PK-like) 383 677 IPR011009 -
Cmu01g0940 711 CDD STKc_IRAK 409 680 - -
Cmu01g0940 711 ProSiteProfiles Protein kinase domain profile. 403 680 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g0940 711 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 26 253 - -
Cmu01g0940 711 Gene3D Ribonuclease Inhibitor 25 252 IPR032675 -
Cmu01g0940 711 Pfam Leucine rich repeat 115 175 IPR001611 GO:0005515(InterPro)
Cmu01g0940 711 SUPERFAMILY L domain-like 25 232 - -
Cmu01g0940 711 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 211 682 IPR046959 -
Cmu01g0940 711 MobiDBLite consensus disorder prediction 244 263 - -
Cmu01g0940 711 Gene3D Transferase(Phosphotransferase) domain 1 481 704 - -
Cmu01g0940 711 Pfam Protein kinase domain 406 675 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g0940 711 Gene3D Phosphorylase Kinase; domain 1 366 480 - -
Cmu01g0940 711 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Cmu01g0940 711 MobiDBLite consensus disorder prediction 264 286 - -
Cmu01g0940 711 MobiDBLite consensus disorder prediction 240 286 - -
Cmu01g0940 711 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 481 691 - -
Cmu01g0940 711 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 368 480 - -
Cmu01g0940 711 Pfam Leucine Rich Repeat 211 230 IPR001611 GO:0005515(InterPro)
Cmu01g0940 711 Pfam Leucine Rich Repeat 94 113 IPR001611 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0940 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0940 Cmu-Chr1:12894479 Cmu08g0448 Cmu-Chr8:14837565 4.30E-134 dispersed
Cmu01g0940 Cmu-Chr1:12894479 Cmu07g1401 Cmu-Chr7:29264052 2.50E-150 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu02g0127 . 34 786 Strubbelig Receptor Gene Family AT4G03390 62.5 6.6e-205 711.1
Cmu01g2223 . 17 709 Strubbelig Receptor Gene Family AT4G03390 51.7 3.0e-141 499.6
Cmu09g0141 . 393 687 Strubbelig Receptor Gene Family AT4G03390 58.4 3.4e-92 336.7
Cmu10g2475 . 1 726 Strubbelig Receptor Gene Family AT5G06820 53.5 3.8e-186 648.7
Cmu08g0448 . 22 707 Strubbelig Receptor Gene Family AT1G78980 60.4 1.8e-193 672.9
Cmu07g1401 . 166 855 Strubbelig Receptor Gene Family AT1G78980 50.9 6.3e-146 515.0
Cmu09g0141 . 24 690 Strubbelig Receptor Gene Family AT1G78980 50.2 5.7e-123 438.7
Cmu08g0448 . 20 685 Strubbelig Receptor Gene Family AT3G13065 54.4 6.6e-148 521.5
Cmu01g0940 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.2 1.4e-84 311.2
Cmu10g2475 . 1 726 Strubbelig Receptor Gene Family AT5G06820 53.5 3.8e-186 648.7
Cmu02g0127 . 34 786 Strubbelig Receptor Gene Family AT4G03390 62.5 6.6e-205 711.1
Cmu01g2223 . 17 709 Strubbelig Receptor Gene Family AT4G03390 51.7 3.0e-141 499.6
Cmu09g0141 . 393 687 Strubbelig Receptor Gene Family AT4G03390 58.4 3.4e-92 336.7
Cmu08g0448 . 20 685 Strubbelig Receptor Gene Family AT3G13065 54.4 6.6e-148 521.5
Cmu08g0448 . 22 707 Strubbelig Receptor Gene Family AT1G78980 60.4 1.8e-193 672.9
Cmu07g1401 . 166 855 Strubbelig Receptor Gene Family AT1G78980 50.9 6.3e-146 515.0
Cmu09g0141 . 24 690 Strubbelig Receptor Gene Family AT1G78980 50.2 5.7e-123 438.7
Cmu07g1401 . 161 855 Strubbelig Receptor Gene Family AT1G53730 60.3 4.1e-201 698.4
Cmu09g0141 . 1 712 Strubbelig Receptor Gene Family AT1G53730 60.7 5.8e-187 651.4
Cmu08g0448 . 20 693 Strubbelig Receptor Gene Family AT1G53730 50.4 1.3e-154 543.9
Cmu01g0940 . 7 689 Strubbelig Receptor Gene Family AT1G53730 50.9 4.5e-147 518.8
Cmu07g1401 . 161 850 Strubbelig Receptor Gene Family AT3G14350 56.8 1.5e-179 626.7
Cmu09g0141 . 6 702 Strubbelig Receptor Gene Family AT3G14350 55.6 2.6e-168 589.3
Cmu01g0940 . 201 711 Strubbelig Receptor Gene Family AT4G22130 68.2 4.2e-177 618.2
Cmu07g1401 . 534 862 Strubbelig Receptor Gene Family AT4G22130 63.4 4.8e-120 428.7
Cmu09g0141 . 391 704 Strubbelig Receptor Gene Family AT4G22130 64.9 2.9e-117 419.5
Cmu02g0127 . 485 796 Strubbelig Receptor Gene Family AT4G22130 58.8 6.0e-107 385.2
Cmu08g0448 . 360 707 Strubbelig Receptor Gene Family AT4G22130 52.4 1.2e-99 360.9
Cmu10g2475 . 387 709 Strubbelig Receptor Gene Family AT4G22130 51.7 9.4e-92 334.7
Cmu01g2223 . 442 709 Strubbelig Receptor Gene Family AT4G22130 60.0 1.4e-90 330.9
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75205 PF00069 Pkinase 6.10E-44 CL0016 Cmu PK