Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0940 ATGGCTCTGCGGGACTTCCTCTTCCTGTTTTTCTTCTTGATCTTTGATTGTATTCCATTTACTCGTGCTCTTACTGATGCTTCTGATGTTCAAGCTTTGCAAGTTATATACACCTCATTGAACAGTCCTCCTCAGCTGACTGGTTGGATTGGTAATGGAGGCGATCCATGTGTAGAGTCATGGAAAGGGGTGACTTGTGAAGGATCTGCTGTTGTTTCCATTGAGATTTCTGGGTTAGGGCTGAATGGAACGATGGGTTATGCGCTCTCAAGTTTTTTGTCATTGGAAAAGCTTGATATGAGCGACAACAATATTCATGACACGATTCCTTACCAATTGCCGCCGAACCTCACGAGCCTAAATATGGCAAAAAACAGCTTAAGTGGTAATCTTCCTTATTCCTTTTCCACCATGGCTTCTCTCAATTATTTGAATATGAGCCACAATTTGCTATCTCAGGCGATAGGAGATGTTTTCACCAATCTTACTACCCTGGGGACCTTGGACCTTTCTTTCAACAACTTTACTGGGGATCTTCCCAAGTCCTTGGGAACTTTATCCAATGTTTCTTCCTTGTTTTTGCAGAACAACCAATTGACTGGCTCTCTCAATATTCTTATCGATTTGCCTCTGACCACTCTAAATGTAGCAAATAATAATTTCAGTGGATGGATACCTCAAGAACTGAAGTCGGTTGAAAATTTCATGTATGATGGAAATTCATTTGACCATAGTCCTGCACCTCCTCCACCACCTTTTACTCCACCTCCTCCTGGTAGATCTCGTAGTAGCCCCAGACATCCTGGGTCTAGCGGTGGCACCCATACTGCCCCAAGTTCTGATGGGAGTTCATCCCACTCAAACAAAGGCTTGCCAGTTTTGGCTATAGTGGGGATAATTTTGGGTGCTATAATTTTTGTCCTCATTGTGTTAGTTGCTTTTGCTGTCTGCATCCAGAAGAGAAAACGAAAGAACATTGGTCTTCGAGCTTCCAGTGGAAGGCTGTCTGTTGGCACCAGTGTGAATGCTGAGGTGCAAGAGCATCGGGTGAAAAGTGTTGCTGCTGTTGCCGATATTAAGCCTCTTCCTGCAGAGAAAATGAATCCTGAGAGGTTGCCGGCGAAAAATGGATCGGTGAAAAGAATAAAGTCCCCTATTACTGCTACTTCATACACCGTTGCTTCCCTTCAAACTGCAACAAATAGTTTTAGCCAAGAATGCATAGTTGGTGAAGGTTCTCTTGGTCGGGTTTACAAAGCTGACTTTCCTAACGGGAAGATAATGGCGATTAAGAAAATCGATAATGCAGCGCTGTCACTACAGGAAGAAGACAATTTTCTTGAAGCAGTTTCAAACATGTCAAGGTTGAGGCATACAAACATTGTCACACTAAATGGTTATTGTGCAGAGCACGGCCAGCGTCTTCTAGTTTATGAGTTCATTGGAAATGGAAGTTTACATGACATGCTGCATTTTGCTGAAGAAAGTAGTAAGACACTGACTTGGAATGCACGTGTCCGGGTAGCACTTGGAACTGCTAGAGCTTTAGAATACTTGCATGAGGTTTGCTTGCCTTCTGTTGTACATAGAAACTTGAAGACTGCAAACATATTACTTGATGAAGATCTCAACCCCCATTTGTCAGATTGTGGTTTGGCTGCTTTAACACCCAACACAGAGCGGCAGATTTCTACTCGGATGGTTGGTTCATTTGGCTATAGTGCTCCGGAATTTGCCTTGTCAGGAATATACACTGTCAAAAGTGATGTGTACAGCTTTGGGGTGGTGATGTTGGAGCTCTTGACTGGCCGAAAGCCGCTTGACAGTTCTAGGGTGAGATCAGAGCAGTCACTTGTGAGATGGGCTACTCCCCAACTACATGATATCGATGCCTTAGCAAAAATGGTAGATCCTACTTTGAACGGAATGTACCCTGCGAAATCTCTGTCCCGCTTTGCTGACATCATTGCTCTCTGTGTTCAGCCTGAGCCTGAATTTCGACCTCCCATGTCCGAAGTAGTACAAGCACTGGTGCGTTTAGTGCAAAGAGCGAGTGTGGTAAAAAGGCATTCGAGCGACGAGACAGGTTTCAGTTACAGAACGCCTGAGCACGATGCAGTTGAGTTGCCATTTTGA 2136 44.19 MALRDFLFLFFFLIFDCIPFTRALTDASDVQALQVIYTSLNSPPQLTGWIGNGGDPCVESWKGVTCEGSAVVSIEISGLGLNGTMGYALSSFLSLEKLDMSDNNIHDTIPYQLPPNLTSLNMAKNSLSGNLPYSFSTMASLNYLNMSHNLLSQAIGDVFTNLTTLGTLDLSFNNFTGDLPKSLGTLSNVSSLFLQNNQLTGSLNILIDLPLTTLNVANNNFSGWIPQELKSVENFMYDGNSFDHSPAPPPPPFTPPPPGRSRSSPRHPGSSGGTHTAPSSDGSSSHSNKGLPVLAIVGIILGAIIFVLIVLVAFAVCIQKRKRKNIGLRASSGRLSVGTSVNAEVQEHRVKSVAAVADIKPLPAEKMNPERLPAKNGSVKRIKSPITATSYTVASLQTATNSFSQECIVGEGSLGRVYKADFPNGKIMAIKKIDNAALSLQEEDNFLEAVSNMSRLRHTNIVTLNGYCAEHGQRLLVYEFIGNGSLHDMLHFAEESSKTLTWNARVRVALGTARALEYLHEVCLPSVVHRNLKTANILLDEDLNPHLSDCGLAALTPNTERQISTRMVGSFGYSAPEFALSGIYTVKSDVYSFGVVMLELLTGRKPLDSSRVRSEQSLVRWATPQLHDIDALAKMVDPTLNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRHSSDETGFSYRTPEHDAVELPF 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12894479 12899694 - CmPI595203_01g009400.1 Cmu01g0940 406446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0940 711 SUPERFAMILY Protein kinase-like (PK-like) 383 677 IPR011009 -
Cmu01g0940 711 CDD STKc_IRAK 409 680 - -
Cmu01g0940 711 ProSiteProfiles Protein kinase domain profile. 403 680 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g0940 711 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 26 253 - -
Cmu01g0940 711 Gene3D Ribonuclease Inhibitor 25 252 IPR032675 -
Cmu01g0940 711 Pfam Leucine rich repeat 115 175 IPR001611 GO:0005515(InterPro)
Cmu01g0940 711 SUPERFAMILY L domain-like 25 232 - -
Cmu01g0940 711 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 211 682 IPR046959 -
Cmu01g0940 711 MobiDBLite consensus disorder prediction 244 263 - -
Cmu01g0940 711 Gene3D Transferase(Phosphotransferase) domain 1 481 704 - -
Cmu01g0940 711 Pfam Protein kinase domain 406 675 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g0940 711 Gene3D Phosphorylase Kinase; domain 1 366 480 - -
Cmu01g0940 711 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Cmu01g0940 711 MobiDBLite consensus disorder prediction 264 286 - -
Cmu01g0940 711 MobiDBLite consensus disorder prediction 240 286 - -
Cmu01g0940 711 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 481 691 - -
Cmu01g0940 711 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 368 480 - -
Cmu01g0940 711 Pfam Leucine Rich Repeat 211 230 IPR001611 GO:0005515(InterPro)
Cmu01g0940 711 Pfam Leucine Rich Repeat 94 113 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0940 Cmu-Chr1:12894479 Cmu08g0448 Cmu-Chr8:14837565 4.30E-134 dispersed
Cmu01g0940 Cmu-Chr1:12894479 Cmu07g1401 Cmu-Chr7:29264052 2.50E-150 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75205 PF00069 Pkinase 6.10E-44 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0940 - - - 0.0