Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1043 ATGATGAAGCAAGTAGCAGAAAATGTTCCAGGTTACATGGGGGGATGGTGGGAGGGGAAAGAAATCAGTTGCTTGAAGTTACAAAATCTGACTTCACTTCTCACCTCTATAAAATGGCTTCTCCACTCTCTAAACCACTCAGCCCCTTTAGCTCACACAAAGAAAGAGAAAAGAGAGGAAGAGAGAAAGAGAGAAAGAGAAGTGAGAGCTATGGCTGCTGGTGGTGATTTCTTGCCCCCCTTGGTTATGCTGGTTGTCCAATTCCTATATGCAGGTTTGAATATTACATCAAAGTTAGCCATGGAGTTTGGGATGAACCCACTAGTTCTAGTTGCTTACAGGCAGATGTTTGCTACCATAGCCATAGCTCCTTGTGCCTACTGGTTTGAGAGAAAAGGGAGACCCAAGATTACAAAGCCTATCCTGTTTCAGATTCTACTTTGTTCCTTAACTGGGGCAACAGCAAACCAAGTCTTTTACTACGTTGGGTTGAAATATTCAACCCCCACCATCGCATGCGCATTGACCAATGTTCTGCCTGCTGCAACTTTTGTCCTCGCTGTTCTTTTCAGACAAGAATCTGTGGGGATCAAAACAAGCCCAGGTGCAGCTAAGGTGATGGGGACTGTTGTATGTGTCGGAGGGGCAATGTTGCTGTCGTTCTACCGTGGACAAACAATCCAGCTTGGTGAATCTGGTATTCATTGGAAGTATGCCGAGTTAATGAGGGGGGGAAGCTCAACCAACCAAGGCAGCAGCATCTGGGGCTCCCTCTGCTTGATCATAAGCTCTGTCGCTTGGGCGGCTTGGTTTGTCATCCAAGCGAGAGTGAATGAGAAGTTTCCAGCACCCTACACGAGCACAGCTGTCATGACTTTCATGGCAACCATTCAATGTGGAGCAATTGCAGTTGGCGTTGAGCACAAGACGGCTGCAGCTTGGTCATTGAAAAGTTCAATCAGGCTTGTTGGCGCTCTCTATGCGGGAGTGGCGTGCTCTGGGGTGGCATTTTGCCTAACCTCCTGGAGTATCCAAAAGAAAGGTCCTCTCTATGCCTCAGTTTTCAGCCCCTTCTTGCTCGTTATTGTGGCTATCTTCAGCTGGGCCTTTTTTCAAGAAAAATTATACGTCGGAACTGTTGTAGGGTCATTGTTGATTGTTGTTGGGCTATATGCTGTCCTATGGGGAAAGACCAAGGAGGTGAAACTACAACAACATATCGAAATGGCGGCGGCAGCAGAGGCAAAGCTAGATGACTGTAATAACAAAGACTTAGAAGAACAGTCCTATGTGGTTTCAAATGCCACTATTCTCCATAACTTAATGATTCTTTGGACAAGTATTAGAGAAGAAGCAACTTCTCCAACAGGTAACTCGGATGCATCAAAGAGATATGGTATATACATTCAACAGAGTCCGAGAGGAGCCTCCTACATGTCCACAGTTTTCAATGTAAAAGGAGTTCTAGCATCAAAGAGACCTCAAATGTAA 1491 45.67 MMKQVAENVPGYMGGWWEGKEISCLKLQNLTSLLTSIKWLLHSLNHSAPLAHTKKEKREEERKREREVRAMAAGGDFLPPLVMLVVQFLYAGLNITSKLAMEFGMNPLVLVAYRQMFATIAIAPCAYWFERKGRPKITKPILFQILLCSLTGATANQVFYYVGLKYSTPTIACALTNVLPAATFVLAVLFRQESVGIKTSPGAAKVMGTVVCVGGAMLLSFYRGQTIQLGESGIHWKYAELMRGGSSTNQGSSIWGSLCLIISSVAWAAWFVIQARVNEKFPAPYTSTAVMTFMATIQCGAIAVGVEHKTAAAWSLKSSIRLVGALYAGVACSGVAFCLTSWSIQKKGPLYASVFSPFLLVIVAIFSWAFFQEKLYVGTVVGSLLIVVGLYAVLWGKTKEVKLQQHIEMAAAAEAKLDDCNNKDLEEQSYVVSNATILHNLMILWTSIREEATSPTGNSDASKRYGIYIQQSPRGASYMSTVFNVKGVLASKRPQM 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16141714 16146146 + CmPI595203_01g010430.1 Cmu01g1043 406549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1043 496 Pfam EamA-like transporter family 81 220 IPR000620 GO:0016020(InterPro)
Cmu01g1043 496 Pfam EamA-like transporter family 255 394 IPR000620 GO:0016020(InterPro)
Cmu01g1043 496 Coils Coil 403 423 - -
Cmu01g1043 496 Coils Coil 50 70 - -
Cmu01g1043 496 PANTHER WAT1-RELATED PROTEIN 81 416 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Cmu01g1043 496 SUPERFAMILY Multidrug resistance efflux transporter EmrE 312 398 - -
Cmu01g1043 496 SUPERFAMILY Multidrug resistance efflux transporter EmrE 113 222 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1043 Cmu-Chr1:16141714 Cmu02g1471 Cmu-Chr2:28480547 3.30E-117 dispersed
Cmu01g1043 Cmu-Chr1:16141714 Cmu04g0632 Cmu-Chr4:20118561 2.90E-68 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1043 - - - 0.0