Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1166 ATGTTGAATCTGTTGTCAAGAGACGTTGTCACCGCCGCACTCGAAGGAGATCGAACCCTCGTTGCTGCTCTTCTTCGCTTACACTTCCATGACTGCTTTGTCTCTGGATGTGACGCTTCCCTCCTCCTAGATGGAAGCAATAGCGAGAAGGAAGCTCCTCCAAACTTCAGCGTGCGAGGCTATGATCTCATTGATGCAGTCAAGATTCAGGTTGAGAAGGCATGTCCTCGAGTTGTCTCTTGTGCTGATATCATTGCCATGGCTACTAGAGATGCTGTCAATTGGGCTGGGGGAGGACGATATAGCGTTGAAACCGGACGACGAGATGCCTTCCGACCAGCTGATATTGTCGATCTTCCTGGGCCTTCAATATCTGTCTCAGATTCCATTGCAGCCTTCTCCAAAAGGAACCTTAATGTTACAGATATGGTTTATCTTCTTGGTGGCCACACTGTTGGTGTATCACAATGCATTTTCTTCAAGGATCGCCTCTATAATTACAAAGACACAGGGGGACCGGACCCCACCATCGATCCGTGGTTTCTCAATGACCTACAAAGCCAATGCCCTCAAGATTCCAACGACGACAACACCGTATTTCTTGACCAGAACCGTATGAGTTCTTTCGTCGTTGACAAGTCGTTTCATAGGCAGATATCGCAACAAAGAGGAATATTGGAAATTGATCAACAGCTTGCTTTGGATCCATTGACAAAGGACTTCGTATGGAATGTGGCGTTCCGATCCGACTTCGCCTTCAAGTTTGGACAAGCATTGATCAAGATGGGAAGAATTCAAGTTCTTACTGGCTCAGAAGGGGAGATTAGAAGAACATGTGGGGCTGTTAATTGA 852 46.83 MLNLLSRDVVTAALEGDRTLVAALLRLHFHDCFVSGCDASLLLDGSNSEKEAPPNFSVRGYDLIDAVKIQVEKACPRVVSCADIIAMATRDAVNWAGGGRYSVETGRRDAFRPADIVDLPGPSISVSDSIAAFSKRNLNVTDMVYLLGGHTVGVSQCIFFKDRLYNYKDTGGPDPTIDPWFLNDLQSQCPQDSNDDNTVFLDQNRMSSFVVDKSFHRQISQQRGILEIDQQLALDPLTKDFVWNVAFRSDFAFKFGQALIKMGRIQVLTGSEGEIRRTCGAVN 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20972333 20976442 - CmPI595203_01g011660.1 Cmu01g1166 406672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1166 283 ProSitePatterns Peroxidases proximal heme-ligand signature. 142 152 IPR019793 -
Cmu01g1166 283 PRINTS Haem peroxidase superfamily signature 79 96 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu01g1166 283 PRINTS Haem peroxidase superfamily signature 97 109 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu01g1166 283 PRINTS Haem peroxidase superfamily signature 21 35 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu01g1166 283 PRINTS Haem peroxidase superfamily signature 142 157 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu01g1166 283 FunFam Peroxidase 120 262 - -
Cmu01g1166 283 SUPERFAMILY Heme-dependent peroxidases 7 283 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu01g1166 283 Pfam Peroxidase 7 246 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu01g1166 283 Gene3D - 7 283 - -
Cmu01g1166 283 ProSiteProfiles Plant heme peroxidase family profile. 1 283 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu01g1166 283 ProSitePatterns Peroxidases active site signature. 21 32 IPR019794 GO:0004601(InterPro)
Cmu01g1166 283 PRINTS Plant peroxidase signature 78 88 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu01g1166 283 PRINTS Plant peroxidase signature 141 153 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu01g1166 283 PRINTS Plant peroxidase signature 97 112 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu01g1166 283 PRINTS Plant peroxidase signature 218 235 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu01g1166 283 PRINTS Plant peroxidase signature 23 43 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu01g1166 283 PRINTS Plant peroxidase signature 59 72 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu01g1166 283 PRINTS Plant peroxidase signature 257 270 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu01g1166 283 PANTHER PEROXIDASE 25-RELATED 7 279 IPR000823 GO:0004601(InterPro)|GO:0004601(PANTHER)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Cmu01g1166 283 Gene3D Peroxidase, domain 2 120 263 - -
Cmu01g1166 283 CDD secretory_peroxidase 7 282 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1166 Cmu-Chr1:20972333 Cmu09g1510 Cmu-Chr9:27852788 5.40E-64 dispersed
Cmu01g1166 Cmu-Chr1:20972333 Cmu09g1683 Cmu-Chr9:32659867 1.10E-56 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1166 K00430 - csv:101210173 473.011