Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1177 ATGGCCAATCTCTCTAATTTCCATGGAATAATCCACCATAATCCTTCTCTTCCTTTCATGAATCCAGAAGGCTCAGCTTTTGATTTTGGAGAGCTGGAAGAAGCCATAGTTTTGCAGGGAGTTAAGCTTGGAAATGATGAACCCAAATCTCCACATTTTCTAACAGGAAGGCCTGCTGCTACTCTTGAAATGTTCCCTTCTTGGCCAATAAGGTTTCAACAAACCCCAACATTGGGAGGAGGTTCAAAGTCAGAGAGTACAGATTCAGGATCAGCAAATATGAACAATACTCTCACAAGCAAAACAGAGTTGGAAATGGAACCTGAATCACCAATAAGTAGAAGAGGTTGTTCTTCAAATCAAGGATTATTTGATCAAAATCATCATCTTCTTCAACTCCAACATCTTCAATCAGAGTTTGAAGATGATGCCTTGAGAACACAACCATCATTACACCAAAATCAATCTCCTCCCAAAGAAAAGAGGAAAGGAGCTGGTTCAACATCAGAGAGACAGCTTGATGCCAAGACACTGAGAAGATTAGCTCAAAACAGAGAAGCTGCAAGAAAGAGCCGACTGAGGAAGAAGGCTTATATTCAACAGCTAGAGTCTAGTAGAATCAAGCTCTCTCAGCTTGAACAAGACCTCCATAGAGCACGTTCCCAGGGATTGTTTCTAGGTGGTTGTGGTGGTGTAATGGGTGGCAATATCAGCTCAGGAGCTGCAATATTTGACATGGAGTATGCGCGGTGGCTAGACGAGGACCACCGTTTGATGGCGGAGCTGCGGGCGGCGTTGCAAGGGCATCTCCCAGACGGGGATCTCCGAGCAATAGTAGAGAGTTACATCTCTCACTACGACGAGATATTTCACCTGAAAGGCGTGGCAGCGAAATCGGACGTGTTTCATTTGATCACAGGAATGTGGATGACTCCGGCGGAGCGTTGCTTCCTGTGGATCGGCGGATTCCGGCCATCAAAGCTCATAGAGATGCTAATTCCGCAATTAGACACATTAACAGAGCAACAAGCAATGGGAATATGTAATTTGCAAAGATCTTCACAAGAAACAGAGGATGCTCTTTATCAGGGGCTTGAGCAGCTGCAGCATTCTCTCATTATCACCATCGCCGGCACCGCTGTCGTCGACGGCATTAACCATATGGCCCTCGCCGCCGGCAAGCTCTCCAATCTTGAAGGCTTCATCCGCCAGGCTGATATGTTGAGACAACAAACGCTTCATCAGTTACATCGAATATTGACAATCCGACAGGCAGCTCGATGTTTCGTGGTAATTGGAGAGTATTATGGAAGACTTCGAGCTCTTAGTTCCTTGTGGGTCTCTCGACCGAGAGAGAGCAGCTGCTTGAATGATGAAAATTCATGCCAAACAACAACAGAGCTACAAATGATTCAGAGTTCCCACACCCATTTCCCAAACTTTTGA 1446 45.57 MANLSNFHGIIHHNPSLPFMNPEGSAFDFGELEEAIVLQGVKLGNDEPKSPHFLTGRPAATLEMFPSWPIRFQQTPTLGGGSKSESTDSGSANMNNTLTSKTELEMEPESPISRRGCSSNQGLFDQNHHLLQLQHLQSEFEDDALRTQPSLHQNQSPPKEKRKGAGSTSERQLDAKTLRRLAQNREAARKSRLRKKAYIQQLESSRIKLSQLEQDLHRARSQGLFLGGCGGVMGGNISSGAAIFDMEYARWLDEDHRLMAELRAALQGHLPDGDLRAIVESYISHYDEIFHLKGVAAKSDVFHLITGMWMTPAERCFLWIGGFRPSKLIEMLIPQLDTLTEQQAMGICNLQRSSQETEDALYQGLEQLQHSLIITIAGTAVVDGINHMALAAGKLSNLEGFIRQADMLRQQTLHQLHRILTIRQAARCFVVIGEYYGRLRALSSLWVSRPRESSCLNDENSCQTTTELQMIQSSHTHFPNF 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21551763 21556723 + CmPI595203_01g011770.1 Cmu01g1177 406683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1177 481 MobiDBLite consensus disorder prediction 148 174 - -
Cmu01g1177 481 ProSiteProfiles DOG1 domain profile. 241 449 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cmu01g1177 481 MobiDBLite consensus disorder prediction 73 106 - -
Cmu01g1177 481 Pfam bZIP transcription factor 175 216 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g1177 481 CDD bZIP_HBP1b-like 176 226 - -
Cmu01g1177 481 MobiDBLite consensus disorder prediction 156 174 - -
Cmu01g1177 481 MobiDBLite consensus disorder prediction 73 121 - -
Cmu01g1177 481 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 174 218 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g1177 481 PANTHER TRANSCRIPTION FACTOR TGA9 127 453 - -
Cmu01g1177 481 FunFam BZIP family transcription factor 175 224 - -
Cmu01g1177 481 SMART brlzneu 172 238 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g1177 481 Coils Coil 195 222 - -
Cmu01g1177 481 SUPERFAMILY Leucine zipper domain 176 218 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g1177 481 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 179 194 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g1177 481 Gene3D - 175 224 - -
Cmu01g1177 481 Pfam Seed dormancy control 259 333 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1177 Cmu-Chr1:21551763 Cmu02g2197 Cmu-Chr2:35617709 2.20E-142 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5508 PF14144 DOG1 7.30E-31 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1177 K14431 - csv:101204604 893.649