Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu01g1177 | ATGGCCAATCTCTCTAATTTCCATGGAATAATCCACCATAATCCTTCTCTTCCTTTCATGAATCCAGAAGGCTCAGCTTTTGATTTTGGAGAGCTGGAAGAAGCCATAGTTTTGCAGGGAGTTAAGCTTGGAAATGATGAACCCAAATCTCCACATTTTCTAACAGGAAGGCCTGCTGCTACTCTTGAAATGTTCCCTTCTTGGCCAATAAGGTTTCAACAAACCCCAACATTGGGAGGAGGTTCAAAGTCAGAGAGTACAGATTCAGGATCAGCAAATATGAACAATACTCTCACAAGCAAAACAGAGTTGGAAATGGAACCTGAATCACCAATAAGTAGAAGAGGTTGTTCTTCAAATCAAGGATTATTTGATCAAAATCATCATCTTCTTCAACTCCAACATCTTCAATCAGAGTTTGAAGATGATGCCTTGAGAACACAACCATCATTACACCAAAATCAATCTCCTCCCAAAGAAAAGAGGAAAGGAGCTGGTTCAACATCAGAGAGACAGCTTGATGCCAAGACACTGAGAAGATTAGCTCAAAACAGAGAAGCTGCAAGAAAGAGCCGACTGAGGAAGAAGGCTTATATTCAACAGCTAGAGTCTAGTAGAATCAAGCTCTCTCAGCTTGAACAAGACCTCCATAGAGCACGTTCCCAGGGATTGTTTCTAGGTGGTTGTGGTGGTGTAATGGGTGGCAATATCAGCTCAGGAGCTGCAATATTTGACATGGAGTATGCGCGGTGGCTAGACGAGGACCACCGTTTGATGGCGGAGCTGCGGGCGGCGTTGCAAGGGCATCTCCCAGACGGGGATCTCCGAGCAATAGTAGAGAGTTACATCTCTCACTACGACGAGATATTTCACCTGAAAGGCGTGGCAGCGAAATCGGACGTGTTTCATTTGATCACAGGAATGTGGATGACTCCGGCGGAGCGTTGCTTCCTGTGGATCGGCGGATTCCGGCCATCAAAGCTCATAGAGATGCTAATTCCGCAATTAGACACATTAACAGAGCAACAAGCAATGGGAATATGTAATTTGCAAAGATCTTCACAAGAAACAGAGGATGCTCTTTATCAGGGGCTTGAGCAGCTGCAGCATTCTCTCATTATCACCATCGCCGGCACCGCTGTCGTCGACGGCATTAACCATATGGCCCTCGCCGCCGGCAAGCTCTCCAATCTTGAAGGCTTCATCCGCCAGGCTGATATGTTGAGACAACAAACGCTTCATCAGTTACATCGAATATTGACAATCCGACAGGCAGCTCGATGTTTCGTGGTAATTGGAGAGTATTATGGAAGACTTCGAGCTCTTAGTTCCTTGTGGGTCTCTCGACCGAGAGAGAGCAGCTGCTTGAATGATGAAAATTCATGCCAAACAACAACAGAGCTACAAATGATTCAGAGTTCCCACACCCATTTCCCAAACTTTTGA | 1446 | 45.57 | MANLSNFHGIIHHNPSLPFMNPEGSAFDFGELEEAIVLQGVKLGNDEPKSPHFLTGRPAATLEMFPSWPIRFQQTPTLGGGSKSESTDSGSANMNNTLTSKTELEMEPESPISRRGCSSNQGLFDQNHHLLQLQHLQSEFEDDALRTQPSLHQNQSPPKEKRKGAGSTSERQLDAKTLRRLAQNREAARKSRLRKKAYIQQLESSRIKLSQLEQDLHRARSQGLFLGGCGGVMGGNISSGAAIFDMEYARWLDEDHRLMAELRAALQGHLPDGDLRAIVESYISHYDEIFHLKGVAAKSDVFHLITGMWMTPAERCFLWIGGFRPSKLIEMLIPQLDTLTEQQAMGICNLQRSSQETEDALYQGLEQLQHSLIITIAGTAVVDGINHMALAAGKLSNLEGFIRQADMLRQQTLHQLHRILTIRQAARCFVVIGEYYGRLRALSSLWVSRPRESSCLNDENSCQTTTELQMIQSSHTHFPNF | 481 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 21551763 | 21556723 | + | CmPI595203_01g011770.1 | Cmu01g1177 | 406683 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu01g1177 | 481 | MobiDBLite | consensus disorder prediction | 148 | 174 | - | - | |
Cmu01g1177 | 481 | ProSiteProfiles | DOG1 domain profile. | 241 | 449 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Cmu01g1177 | 481 | MobiDBLite | consensus disorder prediction | 73 | 106 | - | - | |
Cmu01g1177 | 481 | Pfam | bZIP transcription factor | 175 | 216 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu01g1177 | 481 | CDD | bZIP_HBP1b-like | 176 | 226 | - | - | |
Cmu01g1177 | 481 | MobiDBLite | consensus disorder prediction | 156 | 174 | - | - | |
Cmu01g1177 | 481 | MobiDBLite | consensus disorder prediction | 73 | 121 | - | - | |
Cmu01g1177 | 481 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 174 | 218 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu01g1177 | 481 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 127 | 453 | - | - | |
Cmu01g1177 | 481 | FunFam | BZIP family transcription factor | 175 | 224 | - | - | |
Cmu01g1177 | 481 | SMART | brlzneu | 172 | 238 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu01g1177 | 481 | Coils | Coil | 195 | 222 | - | - | |
Cmu01g1177 | 481 | SUPERFAMILY | Leucine zipper domain | 176 | 218 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu01g1177 | 481 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 179 | 194 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu01g1177 | 481 | Gene3D | - | 175 | 224 | - | - | |
Cmu01g1177 | 481 | Pfam | Seed dormancy control | 259 | 333 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu01g1177 | Cmu-Chr1:21551763 | Cmu02g2197 | Cmu-Chr2:35617709 | 2.20E-142 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
5508 | PF14144 | DOG1 | 7.30E-31 | No_clan | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu01g1177 | K14431 | - | csv:101204604 | 893.649 |