Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1191 ATGGTTTATGTTAACCCCTTTGAAGATATGGGTTTGAGAAATCATATGGCAGATGATAACATCTTTTGTCTTCAATCCCCAACTTTCATAGAATGGCTTAAACCACACAACCCTTCTCCTTCTCCCTCCATCTCTCTCTCGTCTTCGTCTTCGTCTATCTCCGACCGAGATTTAATCTCTCAGACGAGCGTCCAATGCGTTAATACAGGGTTAGTTCCTGATCAACAACATGAATTTTTTGTGTCGTCCCGATGCCTGCCTTTGTTCACCGAGACGGAGGCCTTGCCGAAGAACGACAAAGAATTAGGGGCTCGAGCTCAAGATCATGAAAGGAAATATTTGGGAATTAAAGAGGAGAATGAAGATATGGAGAAAGTTGAAGTGGGTTTGCACATTGGGCTTCCAAATGTTGGTGATGGAAAGAACTTGAATGTTTGTGTAAAGAAAGAAGAAGTAAGCTGCCTGAAGAAAAGCTTCTCTAATTTTAACAATCAAGGAAGGTTTTGGATCCCAACACAGGCTCAGATCCTTGTTGGTCCTATGCAATTTACTTGCTCCATCTGCAACAAGTCATTTAATAGATACAATAACATGCAGATGCACATGTGGGGGCATGGATCTGAGTACAGAAAAGGGCCAGAATCTCTTAGAGGAACACAGCCAGCAGCAATGCTAAGGCTTCCATGTTATTGCTGTGCTCAAGGCTGCAAGAACAACATTAACCATCCAAGAGCCAAGCCATTGAAAGACTTCAGAACCCTTCAAACCCATTACAAAAGAAAGCATGGTTCCAAGCCATTTATGTGTAGAAAATGTGGCAAAACTTTGGCTGTTAAAGGAGATTGGAGAACCCATGAAAAAAATTGTGGTAAGCTTTGGTATTGCAGCTGTGGCTCAGATTTCAAACACAAAAGATCTCTTAAAGATCACATCAGATCCTTTGGCAAAGGCCACTCCCCATGCTCCTCTCTTGATGATGAATGCCTCACTGGGTCTGATCAAGAAGATCACTTCACTTAA 1020 42.16 MVYVNPFEDMGLRNHMADDNIFCLQSPTFIEWLKPHNPSPSPSISLSSSSSSISDRDLISQTSVQCVNTGLVPDQQHEFFVSSRCLPLFTETEALPKNDKELGARAQDHERKYLGIKEENEDMEKVEVGLHIGLPNVGDGKNLNVCVKKEEVSCLKKSFSNFNNQGRFWIPTQAQILVGPMQFTCSICNKSFNRYNNMQMHMWGHGSEYRKGPESLRGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGSKPFMCRKCGKTLAVKGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIRSFGKGHSPCSSLDDECLTGSDQEDHFT 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22315858 22318327 + CmPI595203_01g011910.1 Cmu01g1191 406697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1191 339 FunFam Zinc finger protein WIP2 236 318 - -
Cmu01g1191 339 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 266 290 - -
Cmu01g1191 339 Coils Coil 106 126 - -
Cmu01g1191 339 SMART c2h2final6 183 205 IPR013087 -
Cmu01g1191 339 SMART c2h2final6 230 262 IPR013087 -
Cmu01g1191 339 SMART c2h2final6 267 287 IPR013087 -
Cmu01g1191 339 MobiDBLite consensus disorder prediction 316 339 - -
Cmu01g1191 339 Gene3D Classic Zinc Finger 263 322 - -
Cmu01g1191 339 Gene3D Classic Zinc Finger 182 205 - -
Cmu01g1191 339 ProSiteProfiles Zinc finger C2H2 type domain profile. 183 210 IPR013087 -
Cmu01g1191 339 Pfam Zinc finger, C2H2 type 183 202 IPR013087 -
Cmu01g1191 339 SUPERFAMILY beta-beta-alpha zinc fingers 169 206 IPR036236 -
Cmu01g1191 339 PANTHER ZINC FINGER PROTEIN WIP2 27 326 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(PANTHER)|GO:0010468(InterPro)|GO:0048856(PANTHER)
Cmu01g1191 339 ProSitePatterns Zinc finger C2H2 type domain signature. 185 205 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1191 Cmu-Chr1:22315858 Cmu10g2462 Cmu-Chr10:31211233 7.40E-84 dispersed
Cmu01g1191 Cmu-Chr1:22315858 Cmu02g2312 Cmu-Chr2:36662979 2.10E-83 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5509 PF13912 zf-C2H2_6 5.70E-05 CL0361 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1191 - - - 0.0