Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1265 ATGGCTATTCGAGGAGTCGATTTCAAATGGTACGATGGGTTCTTCTTGTCGATGCTTGCTACTAGTATAATAATTGTGACCATCAATTGGAGAAGGTACAATACTTGTACGTATCCTTTGCACATATGGATTGTGGTTGATTATACTTCTGTGTTTGCATTTCGCCTTTTGCTGTTCATCGATAATGCACTTTCAGCTGGAATGGGATTAGATTTTGGATGGCAGCAGCGATATGCTCGGTTTTGTGGAAGAGTTGTGGTTCTTTCTATTCTCTCTCTATTGCTCTACCCCTTTCTATGTGCCTGGACTGTAATTGGCACCCTGTGGTTTAGAGATGCTAAAGATTGTTTGCCTGAAGAAGGACAGAAATGGGGTTTCCTCATTTGGTTGCTTTTCAGCTACTGTGCCCTCCTTTGCATTGCCTGCATGTCAGTTGGAAAGTGGCTAGCGCGTAGGCAAGCGCACTTGTTCCGTGCCCAACAAGGCATACCAGTATCAGAATATGGGGTACTGGTTGATATGATTAGAGTTCCTGATTGGGCATATGAAGCTGCAGGACTGGAAACACGAGGCATAGGCCAAGATGCTACTGGGTACCATCCCGGGCTGTTCTTAACCTCGGCTCAGAGGGAAGCTGTGGAAGCTCTCATCCAGGAACTTCCAAAGTTCAGGCTGAAGGCTGTCCCAACTGATTGCAGTGAATGCCCTATTTGCCTTGAAGAGTTCCATGTAGGGAATGAGGTCCGTGGTATGCCATGTGCTCATAATTTCCACGTCGAATGTATCGACGAGTGGCTTCGTCTGAATGTTAAATGTCCTCGATGCCGCTCCTCTGTCTTCCCAAATCTCGACCTCAGCGCTCTTTCTAACCTGCATTCAGACACAGAACAAACATCTGACAATGCTTTTGTAACAACCCAACCTTCAAGTCTACCAAGATCGACTCCAACCCGTGCAGCTCATACCGAAAACACAACAGACCTCTATACTGACACTGCCTTAGAAGCTGTGGAGAATGGAAACTCACCTCTGCCATCTGCTTCTCCACATTGA 1053 46.34 MAIRGVDFKWYDGFFLSMLATSIIIVTINWRRYNTCTYPLHIWIVVDYTSVFAFRLLLFIDNALSAGMGLDFGWQQRYARFCGRVVVLSILSLLLYPFLCAWTVIGTLWFRDAKDCLPEEGQKWGFLIWLLFSYCALLCIACMSVGKWLARRQAHLFRAQQGIPVSEYGVLVDMIRVPDWAYEAAGLETRGIGQDATGYHPGLFLTSAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGMPCAHNFHVECIDEWLRLNVKCPRCRSSVFPNLDLSALSNLHSDTEQTSDNAFVTTQPSSLPRSTPTRAAHTENTTDLYTDTALEAVENGNSPLPSASPH 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 25235381 25238624 + CmPI595203_01g012650.1 Cmu01g1265 406771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1265 350 SMART ring_2 235 275 IPR001841 -
Cmu01g1265 350 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
Cmu01g1265 350 MobiDBLite consensus disorder prediction 297 324 - -
Cmu01g1265 350 FunFam E3 ubiquitin-protein ligase SIS3 203 281 - -
Cmu01g1265 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 281 IPR013083 -
Cmu01g1265 350 Pfam Ring finger domain 234 276 IPR001841 -
Cmu01g1265 350 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 341 IPR044793 GO:0004842(InterPro)|GO:0010182(InterPro)
Cmu01g1265 350 SUPERFAMILY RING/U-box 217 284 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1265 Cmu-Chr1:25235381 Cmu05g0094 Cmu-Chr5:890085 1.90E-10 dispersed
Cmu08g1226 Cmu-Chr8:24631607 Cmu01g1265 Cmu-Chr1:25235381 7.50E-09 transposed
Cmu01g1265 Cmu-Chr1:25235381 Cmu06g1744 Cmu-Chr6:28402161 1.40E-162 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1265 K16284 - csv:101222360 695.271