Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1266 ATGAGGAATTTAAACTGGTTTAAGCCAATTTCGATTAATGGGAAGCCTGGGAGGAGGCTTTCACTAGGAGAATACCAGCGTGCTGTGTCGTGGTCTAAGTATTTGGTGTCTTCAGGAGCAGAGATAAAGGGAGAGGGAGAAGAGGAATGGAGTGCTGACATGTCCCAGTTGTTCATTGGCTTCAAATTTGCTACTGGAAGGCACAGTAGGATTTACAGAGGTGTGTATAAACAGAGGGATGTTGCAATTAAGCTGATAAGCCAGCCTGAGGAGGATGAAAATTTGGCTAACTTTCTTGAGAATCAGTTCATTTCAGAGGTGGCATTGCTGTTTCGATTGAGACATCCCAATATCATCACTTTCATTGCAGCTTGCAAGAAACCTCCAGTGTTTTGTATTATCACGGAGTATATGACAGGAGGTTCGTTAAGAAAATATCTCCATCAACAAGAGCCACATTCCGTTCCGCTGAACTTGGTTCTGAAACTAGCCCTCGAAATCTCACGTGGGATGCAGTACCTTCATTCTCAGGGAATACTCCACAGAGATCTCAAATCAGAAAATCTCTTACTCGGTGAAGATATGTGTGTTAAGGTAGCAGATTTCGGTATCTCATGCTTAGAATCTCAATGTGGAAGTGCGAAGGGATTCACCGGAACTTACCGCTGGATGGCACCTGAAATGATCAAAGAAAAACACCACACTAAGAAAGTTGATGTTTATAGCTTTGGCATTGTCTTATGGGAGCTCTTAACTGCATTGACACCATTTGATAACATGACTCCTGAACAGGCAGCATTTGCAGTCTGCCAGAAGAATGCAAGACCACCGCTGCCTTCTGCTTGCCCGCAGGCATTTCGTCATCTGATCAAGAGATGCTGGTCGAGAAATCCCAACAAGCGACCGCACTTTGATGAGATCGTTTCAATCTTGGAAACTTATGCGGAGTGTTACAATGAAGATCCAGATTTTTTTGGTCATTACGTCCCCTCGTCTAGATATACTGCTTTGCAATGCTTACCAAAATGGGTTGACCAAGAAGAAAAGGAGTTCAGCAAGATGGGAAAGCTGAAGACCCATCTCCAACAGCAGTTGCATCTAGTGCGAGTCAAGCCTTCAGCTTCTGCACCCACCACGATTGTTTCATCTACGGGTACATTGAAGGGGTCTGAATTTCATTGGTCTGGTGTACTTCTAGCTGTAGGACTGCTGTCAATTTCAGGTGCTGTAACAGCATTCATAATTAAGAACAAAATAATTCCAAGAATGAAATCCTGGATACGCATGTTGGTAAACGATGGACATGAAGAGATTGTAAAAAGAGAGAGTTCCATTTCAAGTTTGGGAGAAGAAGCAGCTGCTGCTGCGAAAGCAGCTTCAGAAGCGGCAATTGATCTAGCAAGAGCAAGCCAGGATATGTTGAACTCAAAATATCAAGCTTTTGATGTTGAAGCACCTTCAGAAGTGGCAATTGATCTAGCAAGAGCAAGCCAGGATATGTTGAACTCAAAATATCAAGCTTTTGATGTTGAAGCACTTTCAGAAGTGGCAATTGATCTAGCAAGAGCAAGCCATGATATTTTGAAAGAGATAGCAAAAAATTGTGGAGATTGTGGGTTTATTACATATGCGACTACAGGAACTGGAGACTCTGACAAGTGTCTTTCTGGGTTCGGAAGGCGATTCAGAACGAACAAATTATTCTGGCGAAACAGCATCTGGTAA 1725 42.96 MRNLNWFKPISINGKPGRRLSLGEYQRAVSWSKYLVSSGAEIKGEGEEEWSADMSQLFIGFKFATGRHSRIYRGVYKQRDVAIKLISQPEEDENLANFLENQFISEVALLFRLRHPNIITFIAACKKPPVFCIITEYMTGGSLRKYLHQQEPHSVPLNLVLKLALEISRGMQYLHSQGILHRDLKSENLLLGEDMCVKVADFGISCLESQCGSAKGFTGTYRWMAPEMIKEKHHTKKVDVYSFGIVLWELLTALTPFDNMTPEQAAFAVCQKNARPPLPSACPQAFRHLIKRCWSRNPNKRPHFDEIVSILETYAECYNEDPDFFGHYVPSSRYTALQCLPKWVDQEEKEFSKMGKLKTHLQQQLHLVRVKPSASAPTTIVSSTGTLKGSEFHWSGVLLAVGLLSISGAVTAFIIKNKIIPRMKSWIRMLVNDGHEEIVKRESSISSLGEEAAAAAKAASEAAIDLARASQDMLNSKYQAFDVEAPSEVAIDLARASQDMLNSKYQAFDVEALSEVAIDLARASHDILKEIAKNCGDCGFITYATTGTGDSDKCLSGFGRRFRTNKLFWRNSIW 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 25247538 25254042 + CmPI595203_01g012660.1 Cmu01g1266 406772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1266 574 FunFam Serine/threonine-protein kinase isoform 1 47 139 - -
Cmu01g1266 574 PRINTS Tyrosine kinase catalytic domain signature 219 229 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu01g1266 574 PRINTS Tyrosine kinase catalytic domain signature 135 148 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu01g1266 574 PRINTS Tyrosine kinase catalytic domain signature 173 191 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu01g1266 574 PRINTS Tyrosine kinase catalytic domain signature 282 304 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu01g1266 574 PRINTS Tyrosine kinase catalytic domain signature 238 260 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu01g1266 574 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu01g1266 574 CDD STKc_MAP3K-like 66 311 - -
Cmu01g1266 574 ProSiteProfiles Protein kinase domain profile. 57 315 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g1266 574 Gene3D Phosphorylase Kinase; domain 1 47 139 - -
Cmu01g1266 574 SUPERFAMILY Protein kinase-like (PK-like) 46 311 IPR011009 -
Cmu01g1266 574 SMART serkin_6 57 315 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g1266 574 PANTHER SERINE-THREONINE PROTEIN KINASE 55 312 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cmu01g1266 574 Pfam Peroxisomal membrane protein PEX14-like, central 391 478 IPR054154 -
Cmu01g1266 574 Gene3D Transferase(Phosphotransferase) domain 1 140 325 - -
Cmu01g1266 574 Pfam Protein tyrosine and serine/threonine kinase 63 311 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1266 Cmu-Chr1:25247538 Cmu01g2100 Cmu-Chr1:33827041 6.40E-112 dispersed
Cmu02g1931 Cmu-Chr2:33191445 Cmu01g1266 Cmu-Chr1:25247538 1.50E-31 transposed
Cmu05g0522 Cmu-Chr5:4461844 Cmu01g1266 Cmu-Chr1:25247538 6.50E-18 transposed
Cmu05g1580 Cmu-Chr5:25295748 Cmu01g1266 Cmu-Chr1:25247538 4.90E-67 transposed
Cmu11g1140 Cmu-Chr11:21537769 Cmu01g1266 Cmu-Chr1:25247538 2.30E-79 transposed
Cmu01g1266 Cmu-Chr1:25247538 Cmu10g2185 Cmu-Chr10:27918846 8.40E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75209 PF07714 PK_Tyr_Ser-Thr 2.50E-65 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1266 - - - 0.0