Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1293 ATGAAGGAGACTATTAGGTATTTGGTTGGAATAGCAGGGCCAAGTGGGTATGGCTCTAAAGCAAGTGCAGAGCAAGTTACTGAAACTTATCAGTTTTCTTCTCCTTTCACTACCATTATCACTGGGGCAACATCAGGAATTGGAGAGGAAACAGCAAGAGTTTTGGCAAAAAGAGGAGTGAGAATAGTAATGGCAGCAAGGGACATGAAGAAGGCAGCAAAAGTGAAAGAGAGGATCAAAAGAGAAAGTCCAGAGGCAGAAATTTTAGTGTCAGAAATAGACCTCAGCTCTCTTGCTTCTGTTAGGAGGTTCTGTGTCGAGTTTGCAGCTTTAGGGCTACCACTCAACATTCTCATAAACAATGGTGGGGTTTTCTCTCCAAATTTGGAGTATTCTGATGACAAATTTGAATTGACATTTGCTACTAATTATTTGGGACATTACCTTCTGACAGAACTGCTTTTAGATAAATTGATAGAAACATCAAAGAGAACAGGCATCCAAGGAAGAATTATAAACGTCTCTTCTGTTCTCCACGGGTGGGTGAAGAAGGATGATTTCTGCTTCAGTCACCTGCTCAACCCAAACAAATACAATGGCACGCGTGCTTATGCTCAGTCAAAACTGGCTTGCATTTTACATGCCAAGGAGGTGGCTAGACAGTTGAAGGAAAGAGATGCCAATGTGACAATCAATGCAGTGCATCCAGGAATTGTGAAGACTGCAATTATCAGAGCACATCGAGGATTTATCACAGATTCTCTGTTTTTCATGGCATCAAAGTTACTAAAATCCATTCCTCAGGGTGCTGCTACAACATGCTATGTAGCTCTAAGTCCACAAACACAAAGAAAAACAGGAAAATATTTTGCAGATTGTAATGAAACTAAGTGTTCATCCGTGGCCAACGACGAGCTAGCAGCACGAACGCTATGGATGCAAACTCGTGCCCTAATTCTCAGAGAACTTGGTGAAGCAGCTCTAGCTACTTAA 993 41.69 MKETIRYLVGIAGPSGYGSKASAEQVTETYQFSSPFTTIITGATSGIGEETARVLAKRGVRIVMAARDMKKAAKVKERIKRESPEAEILVSEIDLSSLASVRRFCVEFAALGLPLNILINNGGVFSPNLEYSDDKFELTFATNYLGHYLLTELLLDKLIETSKRTGIQGRIINVSSVLHGWVKKDDFCFSHLLNPNKYNGTRAYAQSKLACILHAKEVARQLKERDANVTINAVHPGIVKTAIIRAHRGFITDSLFFMASKLLKSIPQGAATTCYVALSPQTQRKTGKYFADCNETKCSSVANDELAARTLWMQTRALILRELGEAALAT 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 25492835 25496303 - CmPI595203_01g012930.1 Cmu01g1293 406799

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1293 330 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 37 297 IPR036291 -
Cmu01g1293 330 Pfam short chain dehydrogenase 38 177 IPR002347 -
Cmu01g1293 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 169 177 IPR002347 -
Cmu01g1293 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 204 223 IPR002347 -
Cmu01g1293 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 113 124 IPR002347 -
Cmu01g1293 330 CDD retinol-DH_like_SDR_c_like 37 312 - -
Cmu01g1293 330 Gene3D - 34 322 - -
Cmu01g1293 330 PANTHER RETINOL DEHYDROGENASE 14 319 - -
Cmu01g1293 330 PRINTS Glucose/ribitol dehydrogenase family signature 163 179 IPR002347 -
Cmu01g1293 330 PRINTS Glucose/ribitol dehydrogenase family signature 204 223 IPR002347 -
Cmu01g1293 330 PRINTS Glucose/ribitol dehydrogenase family signature 37 54 IPR002347 -
Cmu01g1293 330 PRINTS Glucose/ribitol dehydrogenase family signature 227 244 IPR002347 -
Cmu01g1293 330 PRINTS Glucose/ribitol dehydrogenase family signature 113 124 IPR002347 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1293 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1293 Cmu-Chr1:25492835 Cmu10g0939 Cmu-Chr10:1369701 1.10E-79 dispersed
Cmu01g0181 Cmu-Chr1:1791630 Cmu01g1293 Cmu-Chr1:25492835 1.70E-93 transposed
Cmu01g0701 Cmu-Chr1:7874119 Cmu01g1293 Cmu-Chr1:25492835 1.70E-22 transposed
Cmu01g1293 Cmu-Chr1:25492835 Cmu06g1767 Cmu-Chr6:28697200 2.00E-134 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g794 Blo04g00726 . . . Bpe12g00629 Bpe13g00248 Bma06g00212 . Cmo13g00903 . Cma10g00111 . Car10g00100 . . Cpe20g00254 . . . . . . . . Cla06g01682 Cam06g1869 Cec06g1918 Cco06g1923 Clacu06g1824 Cmu06g1767 Cre06g2583 Cone2ag0923 Cone16ag0084 Cone13ag0157 Cone19ag0156 Lsi02g00396 . . . Blo13g00099 . Bda11g01661 Bda14g00802 . Bpe15g00646 Bma03g00776 . . Cmo10g00115 . Cma13g00871 . Car13g00713 . . Cpe18g00854 Bhi08g01646 . . Lac10g0476 . . . Cla01g01319 Cam01g1411 Cec01g1442 Cco01g1481 Clacu01g1384 Cmu01g1293 Cre01g1248 Lsi06g01573 Csa01g00128 Chy02g02599 Cme02g01995
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002718 2 2 2 2 2 2 2 2 2 1 2 2 2 1 1 2 2 4 2 2 1 1 2 2 2 2 2 3 2 1 57