Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu01g1297 | ATGGGATCAACAACAACAAACAGCCATTATTATAGCCCTTGTGCAGCTTGCAAATTCCTAAGAAGAAAATGCTTAGAAGGATGTGTTTTTGCACCCTATTTTCCACCTGAAGAACCCCAAAAATTTGCCAATGTCCACAAGGTATTCGGAGCGAGTAACGTTGCGAAGCTCCTGAACGACGTTCTTCCTCATCAACGACAAGATGCCGTGGTTTCGCTCGCCTATGAAGCCGAGGCGAGAATCAGAGATCCTGTTTATGGCTGTGTTGGAGCAATTTCTTTCCTCCAAAAACAGGTCCAAAAGCTCCAAAAAGAACTTGATGCTGCTAAAGCTTGCCTTTTTCTCTACTCTTGCACTGATTTCTCAACTCCCCTTTTGCCTCCTCACCCTCAGATTATTACTACTCCTCATCCACTGATTTGGAATAATAATCTTAATCTTAATCTTAATAATAATAATCATGATATTACTAATTCTTCTATGTATTTTAATGGAGGAATTTGA | 504 | 40.08 | MGSTTTNSHYYSPCAACKFLRRKCLEGCVFAPYFPPEEPQKFANVHKVFGASNVAKLLNDVLPHQRQDAVVSLAYEAEARIRDPVYGCVGAISFLQKQVQKLQKELDAAKACLFLYSCTDFSTPLLPPHPQIITTPHPLIWNNNLNLNLNNNNHDITNSSMYFNGGI | 167 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 25547676 | 25548179 | - | CmPI595203_01g012970.1 | Cmu01g1297 | 406803 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu01g1297 | 167 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 12 | 118 | - | - | |
Cmu01g1297 | 167 | Coils | Coil | 92 | 112 | - | - | |
Cmu01g1297 | 167 | ProSiteProfiles | LOB domain profile. | 12 | 113 | IPR004883 | - | |
Cmu01g1297 | 167 | Pfam | Lateral organ boundaries (LOB) domain | 13 | 110 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu01g1297 | Cmu-Chr1:25547676 | Cmu11g1129 | Cmu-Chr11:21248884 | 7.70E-42 | dispersed | |
Cmu01g1297 | Cmu-Chr1:25547676 | Cmu10g2152 | Cmu-Chr10:27552403 | 2.20E-49 | wgd | |
Cmu01g1297 | Cmu-Chr1:25547676 | Cmu06g1772 | Cmu-Chr6:28767374 | 1.80E-51 | wgd | |
Cmu01g1297 | Cmu-Chr1:25547676 | Cmu09g1851 | Cmu-Chr9:34644362 | 4.30E-45 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
5513 | PF03195 | LOB | 3.70E-42 | No_clan | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu01g1297 | - | - | - | 0.0 |