Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1297 ATGGGATCAACAACAACAAACAGCCATTATTATAGCCCTTGTGCAGCTTGCAAATTCCTAAGAAGAAAATGCTTAGAAGGATGTGTTTTTGCACCCTATTTTCCACCTGAAGAACCCCAAAAATTTGCCAATGTCCACAAGGTATTCGGAGCGAGTAACGTTGCGAAGCTCCTGAACGACGTTCTTCCTCATCAACGACAAGATGCCGTGGTTTCGCTCGCCTATGAAGCCGAGGCGAGAATCAGAGATCCTGTTTATGGCTGTGTTGGAGCAATTTCTTTCCTCCAAAAACAGGTCCAAAAGCTCCAAAAAGAACTTGATGCTGCTAAAGCTTGCCTTTTTCTCTACTCTTGCACTGATTTCTCAACTCCCCTTTTGCCTCCTCACCCTCAGATTATTACTACTCCTCATCCACTGATTTGGAATAATAATCTTAATCTTAATCTTAATAATAATAATCATGATATTACTAATTCTTCTATGTATTTTAATGGAGGAATTTGA 504 40.08 MGSTTTNSHYYSPCAACKFLRRKCLEGCVFAPYFPPEEPQKFANVHKVFGASNVAKLLNDVLPHQRQDAVVSLAYEAEARIRDPVYGCVGAISFLQKQVQKLQKELDAAKACLFLYSCTDFSTPLLPPHPQIITTPHPLIWNNNLNLNLNNNNHDITNSSMYFNGGI 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 25547676 25548179 - CmPI595203_01g012970.1 Cmu01g1297 406803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1297 167 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 12 118 - -
Cmu01g1297 167 Coils Coil 92 112 - -
Cmu01g1297 167 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Cmu01g1297 167 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1297 Cmu-Chr1:25547676 Cmu11g1129 Cmu-Chr11:21248884 7.70E-42 dispersed
Cmu01g1297 Cmu-Chr1:25547676 Cmu10g2152 Cmu-Chr10:27552403 2.20E-49 wgd
Cmu01g1297 Cmu-Chr1:25547676 Cmu06g1772 Cmu-Chr6:28767374 1.80E-51 wgd
Cmu01g1297 Cmu-Chr1:25547676 Cmu09g1851 Cmu-Chr9:34644362 4.30E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5513 PF03195 LOB 3.70E-42 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1297 - - - 0.0