Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1304 ATGGAAAAATCTGGTTGTCTAAATTACACGACGACGCCATGGGAATTCGTGAAACCCGGTACCCTCGAAAGACGCATTTCTTACCAATTCAATCATGACATATCAATCTTTGAAGGCAAAGTGACATGCATTCAGCAAAAAATCCCCATTGCAGACAGTGATGAAGACGAATGGGTACTAAACGAGGTCATGAGGTTGCACGATGTCCCGTTTGACAACTGTTTTCGTGTTCATTTCAGGTACTGTTTTGAGGATTCTGAGATAGCTAAAAATGCTTGCAAATGCAAGGCTTTCTATGGAATCACTTGGCTTAAAAGCACGGAGCTTCAGCAGAAGATCACCCAGAACATAGCTGACGAGTTTGGACATCGACTTAAACTCATATTTGAATTGATTGAGAGGGAAATTCTTATTGCAACCCAATCTTAA 429 41.03 MEKSGCLNYTTTPWEFVKPGTLERRISYQFNHDISIFEGKVTCIQQKIPIADSDEDEWVLNEVMRLHDVPFDNCFRVHFRYCFEDSEIAKNACKCKAFYGITWLKSTELQQKITQNIADEFGHRLKLIFELIEREILIATQS 142
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 25608585 25609113 + CmPI595203_01g013040.1 Cmu01g1304 406810

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1304 142 ProSiteProfiles VASt domain profile. 1 136 IPR031968 -
Cmu01g1304 142 Pfam VAD1 Analog of StAR-related lipid transfer domain 1 119 IPR031968 -
Cmu01g1304 142 PANTHER BNAA05G37250D PROTEIN 1 137 IPR044511 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1304 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g818 . . . . . . . . . Cmo18g00151 . . . . . . . . . . . . . . . . . . . . . Cone2ag0931 . . . Lsi02g00412 Csa01g00881 Chy12g01241 Cme12g01664 . . . . . . . . . . . . Cma18g00190 . Car18g00182 Cpe09g01005 . Bhi08g01658 Tan05g1972 . . . . . Cla01g01329 Cam01g1399 Cec01g1431 Cco01g1492 Clacu01g1396 Cmu01g1304 Cre01g1237 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0025161 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2