Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1323 ATGACATCAATGCAACTTTTTTATTATTTTGACTCTACACCACTTCAGAAAGCTGGAAAATTGGCTGCTGTTACTGCAGAGGGAATTGTGAAAGTTGCAATATATTCAGCCGAGAGGGTCTGTTGCTGTTTTGTTCTTGAATGTTTGAAGGGTCTGTTTGATTTTTCTGCAGAGTTGGTGAGGGAGAGCGGCGATGGGGGTATCAATGGCCACCTTGATAGCACCGGGAAGTATGTCCGTTACACGACGGAGCAAGTGGAGGCTCTTGAGCGAGTCTATGCGGAATGTCCTAAACCAAGCTCTTTGCGCCGTCAGCAGCTGGTTCGTGATTGCCCCATTTTAGCCAACATCGAGCCCAAGCAGATCAAAGTCTGGTTCCAGAACCGCAGATGTAGAGAGAAACAAAGAAAAGAGGCTTCTCGTTTACAGTCGCTAAATAGTAAATTGACGGCCATGAACAAGCTGTTGATGGAGGAGAATGATAGGTTGCAGAAGCAAGTGTCTCAGCTTGTCTGTGAGAATGGGTATATGCGCCAACATTTGCAAACTGCTAATGCACCAACAGCAACAACTACTGATGCAGCTTGTGACTCGGTGGCTACTACCCCTCAGCATTCACTTAGAGATGCTAGTAGCCCTGCTGGACTCTTGTCTATTGCCGAGGAGATTTTGGCAGCCTTCCTGTCAAAGGCTATGGGAACTGCTGTCGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCAGATTCGGTGGGAATCTTTGCCATTTCACAAAGTTGCAGTGGAGTGGCCGCTCGAGCTTGTGGTCTAGTCGGTTTAGAGCCCATGAAGATTGCAGAGATCCTAAAAGATCGCCCATCTTGGTTTCGTGATTGCCGGAGCCTTGAAGTCTTTACTACATTTCCCACTGGTGATGGTGGAACAATCGAACTTGTTTATACGCAGGTTTATGCCCCGACTACATTAGCACCTGCACGAGATTTTTGGACTCTAAGATACACCAGAACTTTAGAAAATGGTAATCTTGTGGTTTGTGAGAGATCGCTGTCTGGGTCTGGCACTGGGCCAAATGCAGCTTCTGCTTCTCAATTTGTGAGAGCTGAAATGCTTCCCAGTGGCTATTTGATTCGTCCATGCGAGGGCGGAGGTTCGATCATCCACATTGTAGACCATCTAAATCTTGAGCCTGGGGGTGTGCCAGAGGTAGTACGACCACTTTATGAATCATCAAAGGCCGTTGCGCAGAAAATGACCATAGCAGCTCTTCGCTACATTAGGCAAATCGCTCAAGAGACAAGTGGTGAAGTTGTATACAGTTTAGGCAGGCAACCAGCCGTTCTGCGAACTTTTAGCCAAAGATTAAGCAGAGGATTTAATGATGCTGTCAATGGATTCAATGATGATGGGTGGTCTTTGATCAATTGTGATGGAGCTGAAGATGTGACCCTTGCCATAAATTCAAGCAAGAATCTAAATACATCATATGATCCAGTCAATTCTCTTGCATTCCACGGTGGGATCCTTTGTGCAAAGGCTTCCATGCTTCTCCAAAATGTTCCTCCCATTGCTCTAATTCGCTTCTTGAGGGAGCATCGGTCCGAGTGGGCTGATTTCAATGTTGATGCCTACTCTGCTGCATCGCTAAAAACTGGCTTGTATGTATACCCGGGCATGAGACCGACGAGGTTTACAGGGAGTCAAATCATCATGCCACTCGGCCATACAATTGAACAAGAAGAGTTGCTTGAAGTTGTAAGACTTGAAAGCCACCCTCTTGCTCAAGAAGATGCTTTTATGTCCCGGGACGTTCATCTCTTGCAGGTGTGTACTGGAATCGATGAGAATGCTGTTGGGGCGTGTTCCGAACTTGTGTTTGCTCCCATCGATGAGATGTTTCCTGATGATGCTGTGCTGCTGGCATCTGGTTTCAGGATCATTCCATTACATTCTAAAACAAGTGACCCAAAAGATACATGGAACTCAAATAGGACTCTGGATCTCACGTCCATTCTTGAAGTTGGCTCATCTGCTTCTCAAGATGCTGCTGCTGCTGCATCAACTTCTAACTTCAGATCGGTTTTGACCATTGCTTTCCAGTTCCCGTTTGGCATCAACTCGCAGGATGACATTGCAGCGATGGCTCGACAGTATGTCCGGAGTGTCATTTCAGCTGTGCAGAGGGTTGCAGTCGCCATATCACCCCCTAGTTTAAGCTCGTCGTCAGAGCCAAAGCAAACATCTGCCTGTCCAGAAGCGCTTACACTGGTTCGATGGGTCTGCCACAGCTACAGATGCCATACTGGAACAGAGCTCGTGCCATCAGACAGTTTGGATGGTGACTCGGTGTTGAAACATCTATGGAATCATCAGGATGCAATTCTGTGTTGTTCCCTCAAGTCACTGCCCCCAGTATTCATGTTTGCAAACCAAGCAGGCCTTGACATGTTGGAGACAACCTTAGTTGCCTTACAAGACATCACTTTGGATAAAATTTTTGGCGACTCGGTCCGCAAGGCTTTCTCTGATGTTTTTTCCAGCTTAATGAACCAGGGCTTTGCTTACATTCCTGCTGGAATTTGCATGTCAACAATGGGACGACATGCTTCCTTTGAACAGGCTGTTGCATGGAAAGTCCTTGCAGAAGATGAGTCCACCGTGCACTGTCTCGCCTTCTCCTTCGTCAACTGGTCGTTCCTGTGA 2700 47.11 MTSMQLFYYFDSTPLQKAGKLAAVTAEGIVKVAIYSAERVCCCFVLECLKGLFDFSAELVRESGDGGINGHLDSTGKYVRYTTEQVEALERVYAECPKPSSLRRQQLVRDCPILANIEPKQIKVWFQNRRCREKQRKEASRLQSLNSKLTAMNKLLMEENDRLQKQVSQLVCENGYMRQHLQTANAPTATTTDAACDSVATTPQHSLRDASSPAGLLSIAEEILAAFLSKAMGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVGLEPMKIAEILKDRPSWFRDCRSLEVFTTFPTGDGGTIELVYTQVYAPTTLAPARDFWTLRYTRTLENGNLVVCERSLSGSGTGPNAASASQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEPGGVPEVVRPLYESSKAVAQKMTIAALRYIRQIAQETSGEVVYSLGRQPAVLRTFSQRLSRGFNDAVNGFNDDGWSLINCDGAEDVTLAINSSKNLNTSYDPVNSLAFHGGILCAKASMLLQNVPPIALIRFLREHRSEWADFNVDAYSAASLKTGLYVYPGMRPTRFTGSQIIMPLGHTIEQEELLEVVRLESHPLAQEDAFMSRDVHLLQVCTGIDENAVGACSELVFAPIDEMFPDDAVLLASGFRIIPLHSKTSDPKDTWNSNRTLDLTSILEVGSSASQDAAAAASTSNFRSVLTIAFQFPFGINSQDDIAAMARQYVRSVISAVQRVAVAISPPSLSSSSEPKQTSACPEALTLVRWVCHSYRCHTGTELVPSDSLDGDSVLKHLWNHQDAILCCSLKSLPPVFMFANQAGLDMLETTLVALQDITLDKIFGDSVRKAFSDVFSSLMNQGFAYIPAGICMSTMGRHASFEQAVAWKVLAEDESTVHCLAFSFVNWSFL 899
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26050812 26059446 - CmPI595203_01g013230.1 Cmu01g1323 406829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1323 899 SUPERFAMILY Homeodomain-like 75 139 IPR009057 -
Cmu01g1323 899 CDD START_ArGLABRA2_like 213 429 - -
Cmu01g1323 899 Pfam MEKHLA domain 754 898 IPR013978 -
Cmu01g1323 899 Gene3D - 71 143 - -
Cmu01g1323 899 FunFam Homeobox-leucine zipper protein REVOLUTA 77 132 - -
Cmu01g1323 899 Gene3D - 254 435 IPR023393 -
Cmu01g1323 899 ProSiteProfiles 'Homeobox' domain profile. 72 136 IPR001356 GO:0003677(InterPro)
Cmu01g1323 899 SUPERFAMILY Bet v1-like 218 430 - -
Cmu01g1323 899 CDD bZIP 129 168 - -
Cmu01g1323 899 ProSiteProfiles START domain profile. 209 437 IPR002913 GO:0008289(InterPro)
Cmu01g1323 899 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 72 899 IPR044830 GO:0003700(InterPro)
Cmu01g1323 899 Pfam Homeodomain 77 135 IPR001356 GO:0003677(InterPro)
Cmu01g1323 899 SMART START_1 218 428 IPR002913 GO:0008289(InterPro)
Cmu01g1323 899 SMART HOX_1 74 140 IPR001356 GO:0003677(InterPro)
Cmu01g1323 899 CDD homeodomain 77 137 IPR001356 GO:0003677(InterPro)
Cmu01g1323 899 Pfam START domain 219 426 IPR002913 GO:0008289(InterPro)
Cmu01g1323 899 Coils Coil 142 173 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1323 Cmu-Chr1:26050812 Cmu02g2110 Cmu-Chr2:34730168 0.00E+00 dispersed
Cmu01g1323 Cmu-Chr1:26050812 Cmu01g2457 Cmu-Chr1:36523388 0.00E+00 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5515 PF01852 START 8.60E-46 CL0209 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1323 K09338 - rcu:8266275 1325.84