Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmu01g1335 | ATGTTTTCTCTTCCTTCACAAGATCCCTTGGTTTCATCTTCTAATGATCATCATGAAACCCTAGACAACCTTCTTTCTTCATATTCCCAATCAAGCAACTCTCTCCTTTATAACCTCTCAATTTTGAAGGAGAAACTCCACCAAATCCAATCTGTTGTCAACATAGCCATCTACAACCTTCAAAACTCAACTGAATCTCTGCCCCCGGCCTCGTCGCCAGTGGCGACTGCGGCCGTCAACTCTTTGATTCAAGAACTCATCATGGCTGCTTCCTCCATGTTGTTCACATGTCAACAGATGGATAACCTCGTCGTGAATGCCTCCTTACACAACAACAACGTCGATAACAACCTCCACGATCAGCACCACCACCGTCAAGGTCCCGTTGACGATGACAATCGACGATCCAACACCCTTCTAGACATGGCCAACGACCATCATCACCAACATCAGGATTGGTACAACATGACGACATCTACTAATTATAACAACAACGATAACAACAACAGTAGAATAACGACAACAAAAACAACACAAGATCATCGAAATTCGATCAATATCGTCGAGCTAGATGCTTCGGATCTTCTAGCAAAATACACCCATTATTGTCAAATTTGTGGGAAAGGGTTCAAGCGAGATGCCAACTTGAGAATGCACATGCGAGCGCACGGGGACGAGTACAAAGCAAGCGGGGCGTTGAGCAACCCAGAGAAGAGCCATAGAAGGGACTTGAATAATATAAGCAAGATGGGGACCAAATATTCATGTCCACAAGAAGGCTGCAGATGGAACCAAAAACATGTCAAGTTTCAACCATTGAAATCACTGATTTGTGTGAAAAATCACTTCAAAAGAACTCATTGCCCCAAAATGTATGTTTGCAAATTGTGTAGTAGGAAGAAATTTTCAGTGCTATCTGATTTGAGAACTCATGAGAAGCACTGTGGAGATGTGAAATGGCTATGTTCTTGTGGAACAACATTTTCCAGAAAAGATAAGCTGATGGGACATGTTGCTTTGTTTGTGGGGCATGCTCCAGCCATCGGTTCGTCAACAAAATTTTCGGGAAAACAGGAAGAACATCAGTATGTTCATTCGTTCTAA | 1104 | 42.75 | MFSLPSQDPLVSSSNDHHETLDNLLSSYSQSSNSLLYNLSILKEKLHQIQSVVNIAIYNLQNSTESLPPASSPVATAAVNSLIQELIMAASSMLFTCQQMDNLVVNASLHNNNVDNNLHDQHHHRQGPVDDDNRRSNTLLDMANDHHHQHQDWYNMTTSTNYNNNDNNNSRITTTKTTQDHRNSINIVELDASDLLAKYTHYCQICGKGFKRDANLRMHMRAHGDEYKASGALSNPEKSHRRDLNNISKMGTKYSCPQEGCRWNQKHVKFQPLKSLICVKNHFKRTHCPKMYVCKLCSRKKFSVLSDLRTHEKHCGDVKWLCSCGTTFSRKDKLMGHVALFVGHAPAIGSSTKFSGKQEEHQYVHSF | 367 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 26567780 | 26568883 | + | CmPI595203_01g013350.1 | Cmu01g1335 | 406841 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmu01g1335 | 367 | Gene3D | Classic Zinc Finger | 290 | 340 | - | - | |
| Cmu01g1335 | 367 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 203 | 223 | IPR013087 | - | |
| Cmu01g1335 | 367 | Gene3D | Classic Zinc Finger | 178 | 259 | - | - | |
| Cmu01g1335 | 367 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 201 | 228 | IPR013087 | - | |
| Cmu01g1335 | 367 | SMART | c2h2final6 | 254 | 287 | IPR013087 | - | |
| Cmu01g1335 | 367 | SMART | c2h2final6 | 292 | 314 | IPR013087 | - | |
| Cmu01g1335 | 367 | SMART | c2h2final6 | 201 | 223 | IPR013087 | - | |
| Cmu01g1335 | 367 | Pfam | Zinc finger, C2H2 type | 201 | 223 | IPR013087 | - | |
| Cmu01g1335 | 367 | FunFam | Zinc finger protein 574 | 200 | 225 | - | - | |
| Cmu01g1335 | 367 | PANTHER | PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 | 26 | 355 | IPR044300 | GO:0010044(InterPro)|GO:0010447(InterPro) | |
| Cmu01g1335 | 367 | SUPERFAMILY | beta-beta-alpha zinc fingers | 199 | 226 | IPR036236 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmu01g1335 | Cmu-Chr1:26567780 | Cmu09g0994 | Cmu-Chr9:10037445 | 1.60E-60 | dispersed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 5516 | PF00096 | zf-C2H2 | 9.40E-05 | CL0361 | Cmu | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmu01g1335 | - | - | - | 0.0 |