Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1362 ATGGCGCTCTCTCTATCCCTACAACTCATCCGTTTCCCTCCTCAACCATTATCCTCATCCTCTCAACATCTTCTCATCTCTGACCTCGCCTCCGTCTCGCGCTTCTTCCGATCTCCATGTCTTTCCTCTTTGGCTCCGTCGCGGAGCTGCACGATGAAGTTATCTTCCAGAACCAAGTGTTTCTCCATGTCCACCGAGGAGGAGCAGTGGAGCGAATCGGAAGCGTTGGTGTCCGATGTGGACGGAGGGGGAGATCTTGAGGATGATATTGATATTGGTGTTCAGGAAGACAGCTCTGTGGCCACTGCTGCTTCTGCGCAGAAAAATTCTGCCTCGTCGCCGAGTGATTATCTGTCACTTGCGATCCGAGAGCAGGTTTATGAGGTGTTAGAGGTTAAAGATGATGGAACCGTATCTACCAGGAAGGTTAACAGACGGCAACTATTGAAGTCAAGTGGGCTTCGTCCACGTGATATCCGAAGTGTTGATCCATCTTTATTTTTGACAAACTCAATGCCAACATTACTGGTCCGTGAACATGCTATTCTGCTTAATCTGGGATCATTGAGAGCAATAGCTATGCAGGATTGTGTCCTCATATTCGATTATAACCGTCCAGGAGGACAAGCTTTTATTGAATCATTGTTGCCTCGATTGAACCCAAAAAACATGAATGGAGTGCCAGCAATGCCATTTGAACTTGAGGTTGTTGAAGCTGCATTGCTTTCACGAACTCAGCGTTTGGAGCAGCGACTAATGAAAGTAGAACCTCGTGTTCAAGCTCTGCTTGAGGTATTGCCCAACAAATTAACTGCAGATGTGTTGGAACAACTTCGTATTAGCAAGCAGACATTGGTTGAATTAGGGTCCAGGGCAGGGGCTCTTAGACAAATGCTTCTTGATCTTCTGGAGGATCCGCAAGAAATACGACGCATCTGTATTATGGGAAGAAATTGCACGCTTAATAAAAGAAATGATGATGTGGAGTGCTCTCTTCCTTTGGATAAGCAGATTGCGGATGAAGAGGAAGAAGAAATAGAAATGCTGTTGGAAAATTATCTCCAGAGATGCGAATCTTGTCATGGTCAGGCTGAAAGGCTTCTGGATTCAGCAAAAGAAATGGAAGATTCAATTGCCGTAAATTTGAGCTCGCGGCGACTAGAGGTTAGCAGAGTGGAGTTGCTTCTCCAAGTTGGGACATTTTGTGTGGCAGTTGGTGCTTTAGTTGCAGGAATATTCGGCATGAACTTACGATCATACCTTGAAGAACACGTGTTTGATGCACTTGTCATGATGCATGCAGTTTGCCTTCTGGTTAACAACAGCTGGGATAATTGTTGGGGCTGTTGTGGCATTCTTTCTCATGTATTCATACCTCAGAGACAGGAGAATCCTGTAGCTAAGTACTTGTTCAGGTCATTCAACACTCAATCTTGGAGGGGCTGCTATATCCCAGTGATGAGGATGCAAATTGTGAAGGCTGCATATCTTATTAGGCCATGCGCCAATATTGGCACAATCACTCAGTTTGGTTTATGA 1539 45.35 MALSLSLQLIRFPPQPLSSSSQHLLISDLASVSRFFRSPCLSSLAPSRSCTMKLSSRTKCFSMSTEEEQWSESEALVSDVDGGGDLEDDIDIGVQEDSSVATAASAQKNSASSPSDYLSLAIREQVYEVLEVKDDGTVSTRKVNRRQLLKSSGLRPRDIRSVDPSLFLTNSMPTLLVREHAILLNLGSLRAIAMQDCVLIFDYNRPGGQAFIESLLPRLNPKNMNGVPAMPFELEVVEAALLSRTQRLEQRLMKVEPRVQALLEVLPNKLTADVLEQLRISKQTLVELGSRAGALRQMLLDLLEDPQEIRRICIMGRNCTLNKRNDDVECSLPLDKQIADEEEEEIEMLLENYLQRCESCHGQAERLLDSAKEMEDSIAVNLSSRRLEVSRVELLLQVGTFCVAVGALVAGIFGMNLRSYLEEHVFDALVMMHAVCLLVNNSWDNCWGCCGILSHVFIPQRQENPVAKYLFRSFNTQSWRGCYIPVMRMQIVKAAYLIRPCANIGTITQFGL 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27078767 27087942 - CmPI595203_01g013620.1 Cmu01g1362 406868

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1362 512 FunFam Magnesium transporter MRS2-11, chloroplastic 122 203 - -
Cmu01g1362 512 Gene3D Magnesium transport protein CorA, transmembrane region 206 387 - -
Cmu01g1362 512 FunFam Magnesium transporter MRS2-11, chloroplastic 205 387 - -
Cmu01g1362 512 Pfam Magnesium transporter MRS2-like 132 386 - -
Cmu01g1362 512 Coils Coil 336 356 - -
Cmu01g1362 512 Gene3D - 119 203 - -
Cmu01g1362 512 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 102 436 IPR039204 GO:0009941(PANTHER)|GO:0015095(PANTHER)|GO:0015693(PANTHER)
Cmu01g1362 512 CDD Mrs2_Mfm1p-like 129 424 IPR039204 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1362 K16075 - - csv:101219314 698.738
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu10g2053 . 1 447 MRS2 Gene Family AT1G16010 85.2 4.0e-207 717.6
Cmu08g0986 . 6 380 MRS2 Gene Family AT1G16010 52.1 2.8e-107 386.0
Cmu06g0647 . 1 365 MRS2 Gene Family AT5G64560 81.0 1.3e-158 556.2
Cmu07g0122 . 788 1159 MRS2 Gene Family AT5G64560 69.2 6.2e-132 467.6
Cmu02g0734 . 14 495 MRS2 Gene Family AT3G19640 64.4 3.0e-155 545.4
Cmu05g1054 . 59 433 MRS2 Gene Family AT3G58970 69.6 6.3e-136 481.1
Cmu02g0026 . 59 386 MRS2 Gene Family AT3G58970 69.9 4.2e-116 415.2
Cmu08g0986 . 6 380 MRS2 Gene Family AT2G03620 68.1 5.5e-137 484.6
Cmu10g2053 . 13 447 MRS2 Gene Family AT2G03620 53.0 1.2e-112 403.7
Cmu06g0647 . 1 327 MRS2 Gene Family AT5G09690 76.1 3.9e-127 451.4
Cmu07g0122 . 788 1121 MRS2 Gene Family AT5G09690 64.2 1.1e-108 390.2
Cmu10g2053 . 40 383 MRS2 Gene Family AT5G09690 50.3 5.8e-78 288.1
Cmu06g0647 . 23 287 MRS2 Gene Family AT5G09720 68.3 1.7e-89 326.2
Cmu07g0122 . 823 1081 MRS2 Gene Family AT5G09720 62.0 2.2e-76 282.7
Cmu10g2053 . 1 447 MRS2 Gene Family AT1G80900 83.2 7.4e-201 696.8
Cmu08g0986 . 6 380 MRS2 Gene Family AT1G80900 54.0 5.3e-106 381.7
Cmu01g1362 . 16 424 MRS2 Gene Family AT5G22830 68.4 8.6e-144 507.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004489 1 3 0 1 1 1 3 1 1 1 1 1 2 1 2 3 1 2 2 1 2 1 1 1 1 2 1 1 1 1 41