Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1363 ATGTCTCGCCGAGGCAGTGGTGGGGGCGGCGGCGGTCGTGGTTCAGGTGGTCGTGGGGGACAGCCGTCTCCGGCTATATCTCGCGGCGGCGGTGGAAGAGGTGGACGAGGCGGTGGAGGGAGAGATGGAGGTAGAGTAGGTCATCCAGCTTCTCAGCAGTTTCCTTCTTCGACTCCTCAGCCTAGTCCGGTTGCTTCCCCTCCTCCTCCCCAGACTTCTACGGGAGCATCTTCTTCATCCTCCTCAGGTACTGCTACTCACTCACAGCCCGAGGTTTCGAGGATTGAGGCACAAGTGGGGAAGATGACATTGACGCCGCAGAAAGTTCCGCCGTCTTCATCTAAAGATTTGGCTGTGGCGAAGAGGCCGGGATATGGAACCATTGGGGACAAAGTTGTTGTTCGAGCTAATCATTTTCTGGTTCATGTTGCAGACAAAGATCTCTACCATTACGATGTTTCCATTATACCTGAGGTTACATCCAAAAAGGTCTGCCGAGAAATTATAGACCAGCTTGCAAAAATGTATAGAGAATCTCATTTGGGTGGAAGATATATAGCATATGATGGTGGAAAAAGTGTTTATGTTGCTGGTCAACTTCCATTTTCGTCCAAAGAGTTCATGATTAAATTAGTCCGTAAAGATGATGCTGGGTCTTCCCAACCAACAAGGAAAGAACGCGAGTTCAAAGTGTCTATCAAATTTGCTTCCAAGCCAGACCTCCATCATCTACAACAGTTTTTACATGGACGGCAGCGAGATGCTCCTCAGGAGACTATACAAGTTCTTGATGTTGTTTTTAGAACAAAACCATCTTTCAAATACACAGTTGTTGGAAGGTCTTTTTTCTCGCTTACTTTGGGGGAACCCGGTGAACTGGGTAATGGTGTTGAGTACTGGAGGGGATATTACCAAAGTCTACGACCTGTACAAATGGGTCTCTCTTTGAATATAGATGTGTCAGCTAGGTCATTTTATGAACCAATATGTGTGACAGACTATGTTGCTAAACACTTCAACCTAAGAAATTTCTCGAAGCCAATATCTGATCAGGATTGTCGCAAGATCCGAAGGGTACTTAAAGGTGTGAAGGTGGCATTAACGTGTAGGGAGCATGCCAGGACCTACAAAATTACTGGGATATCATCAGAGCCTGTAAACAGATTAATGTTCACTCTTGATGATCAGAGAACCCGAATCTATGTTGCACAATACTTTCGTGAAAAATATGGTGTTGTGCTCAAATTTCCATCTCTACCGGCTATACAAGCTGGTAATGATGCGAAGCCCATCTATTTGCCTATGGAGGTTTGTAGGATTGTTGGTGGGCAAAGATATACCAAAAAATTGAATGAACGCCAAGTAACTGAGATGTTAAGAGCGACTTGTCAGAGGCCTTTGGACAGGGCAAACAGTATAAAGAAGATGGTTGAAAAGAACGATTATTCTAAAGATGAAACTGTTACGGATTTTGGCATTAATGTTGTACAACAGTTATGTGATGTTGATGCTCGTGTTTTGCCGTCCCCAATGCTCAAATATCATGAAACTGGCAAAGAATCGAGAGTTGATCCAAGGATGGGTCAATGGAATATGATCGATAAGAAAATGATCAATGGTGGTAGAGTTGATTATTGGGGCTGCGTGAACTTCTCTTCACGGTTGGATCCAGGCCTGCCATCCGAATTTTGCCACCAGTTGGTTAGCATGTGCAATAGCAAAGGAATGGTTTTCAACCCTACTCCGCTGTTTCCTGTACACACTGCACATGCAAATCAAATTGATGGTGTCCTTAGAGACATTCATAGTCGGTCTGTAAAAAGTCTGGGAGCCCAGGGCAAGTCTCTTCAGTTGCTCATAATCATTTTACCTGATGTTTCTGGTTCCTATGGGAAGATCAAAAGGATATGTGAGACCGAGCTTGGAATTGTTTCACAATGTTGCCAGCCTAGGCAGGCGCAAAAGCTAAACAAGCAGTACTTTGAAAATGTGGCCCTTAAAATTAATGTTAAGGTTGGGGGAAGAAACAATGTCCTTAATGATGCTATTCAGCGAAGAATTCCTCTTGTTACGGATCGGCCTACAATAATCATTGGAGCAGATGTAACACATCCACAACCAGGAGAGGACTCCAGTGCTTCAATAGCAGCTGTTGTTGCCTCTATGGACTGGCCTGAGGTAACGAAGTATAGAGGAATCGTTTCAGCTCAGGCTCACCGTGAAGAAATTATACAAGATTTGTACAAAGAGAGTCAAGATCCTCAGAAAGGATTGGTGCGTGCGGGAATGATTAGGGAGCTGTTCATTGCTTTTAGAAGGTCAACGAATATGAAACCGCACAGAATAATATTCTACAGGGATGGTGTAAGTGAAGGACAGTTCTCTCAAGTTCTATTTTATGAGGTGGATGCAATCAGGAAGGCATGTGCCTCGCTTGAAGATGGTTACCAGCCTCCAATAACCTTTGTAGTGGTGCAAAAGAGACATCATACCCGTCTTTTCCCCACTGGTCGGGAAACTGATCGAAGTGGAAACATCCTTCCAGGTACCGTTGTCGATACGAAAATTTGCCATCCAACTGAATTTGATTTCTACTTAAACAGCCATGCTGGCATTCAGGGGACAAGTAGACCAACACATTATCACGTTTTATATGATGAAAACAAATTCACTGCTGATGCAATGCAAATGCTTACGAATAATCTATGCTACACGTATGCAAGGTGCACACGGTCTGTTTCCATTGTTCCACCAGCATACTATGCCCATCTTGCAGCCTTTCGTGCTCGTTATTACATGGAGGGTGATTCATCCGACAGCGGTTCGACGAGTTCAGGTGGTGGGAATGTAGAAATTCAACGGCTGCCAAGCATAAAAGAAAATGTGAAGGATGTCATGTGCATTGCTTTTGAAAGAAATCTGCTGGAGCAAGCTCAAGACAGTCATGAAATCATGAGTCTTTTTGTAAATGTTGATTTGATTAAGTCAATTCAAAGTCTTGGTGCCTTCTATCTTCACCTTCGTGAATTTTATGTGAATCTTCCCAGCCAGTTTGGAAATTCGGATAGCTCTGAGTTCTGCAAGGTTCATGTTAGAGATCATGATGTTATTGGTCTCATTCCTTCCGCAATCACTTTCAGCTATCGACTATATCAAGGCAAGCATGTGCCAGACCTGATTCATTCAAAAGCTTTTGCTGTTGAAAGTGGTCCTTCCCGGGAGTTCCTTCGAACTCCGTGTGATAAAAATCTTGGTTTGTTACTTCAAACGCATCTTGCCCGGAAAGCTGAAGTTGATGATATGCTGCACTTGTTTAGAAGATCTCCTGACGACTTGGATCATGGTCCAGATGCTGGTGGTGATGTTAATGATTGA 3375 43.91 MSRRGSGGGGGGRGSGGRGGQPSPAISRGGGGRGGRGGGGRDGGRVGHPASQQFPSSTPQPSPVASPPPPQTSTGASSSSSSGTATHSQPEVSRIEAQVGKMTLTPQKVPPSSSKDLAVAKRPGYGTIGDKVVVRANHFLVHVADKDLYHYDVSIIPEVTSKKVCREIIDQLAKMYRESHLGGRYIAYDGGKSVYVAGQLPFSSKEFMIKLVRKDDAGSSQPTRKEREFKVSIKFASKPDLHHLQQFLHGRQRDAPQETIQVLDVVFRTKPSFKYTVVGRSFFSLTLGEPGELGNGVEYWRGYYQSLRPVQMGLSLNIDVSARSFYEPICVTDYVAKHFNLRNFSKPISDQDCRKIRRVLKGVKVALTCREHARTYKITGISSEPVNRLMFTLDDQRTRIYVAQYFREKYGVVLKFPSLPAIQAGNDAKPIYLPMEVCRIVGGQRYTKKLNERQVTEMLRATCQRPLDRANSIKKMVEKNDYSKDETVTDFGINVVQQLCDVDARVLPSPMLKYHETGKESRVDPRMGQWNMIDKKMINGGRVDYWGCVNFSSRLDPGLPSEFCHQLVSMCNSKGMVFNPTPLFPVHTAHANQIDGVLRDIHSRSVKSLGAQGKSLQLLIIILPDVSGSYGKIKRICETELGIVSQCCQPRQAQKLNKQYFENVALKINVKVGGRNNVLNDAIQRRIPLVTDRPTIIIGADVTHPQPGEDSSASIAAVVASMDWPEVTKYRGIVSAQAHREEIIQDLYKESQDPQKGLVRAGMIRELFIAFRRSTNMKPHRIIFYRDGVSEGQFSQVLFYEVDAIRKACASLEDGYQPPITFVVVQKRHHTRLFPTGRETDRSGNILPGTVVDTKICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENKFTADAMQMLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYMEGDSSDSGSTSSGGGNVEIQRLPSIKENVKDVMCIAFERNLLEQAQDSHEIMSLFVNVDLIKSIQSLGAFYLHLREFYVNLPSQFGNSDSSEFCKVHVRDHDVIGLIPSAITFSYRLYQGKHVPDLIHSKAFAVESGPSREFLRTPCDKNLGLLLQTHLARKAEVDDMLHLFRRSPDDLDHGPDAGGDVND 1124
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27102881 27116955 - CmPI595203_01g013630.1 Cmu01g1363 406869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1363 1124 MobiDBLite consensus disorder prediction 71 92 - -
Cmu01g1363 1124 FunFam Argonaute 10 506 680 - -
Cmu01g1363 1124 Pfam Piwi domain 619 933 IPR003165 GO:0003676(InterPro)
Cmu01g1363 1124 Pfam Argonaute linker 2 domain 468 514 IPR032472 -
Cmu01g1363 1124 SUPERFAMILY PAZ domain 325 482 IPR036085 GO:0005515(InterPro)
Cmu01g1363 1124 Gene3D paz domain 323 446 - -
Cmu01g1363 1124 SMART PAZ_2_a_3 331 464 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cmu01g1363 1124 Pfam N-terminal domain of argonaute 131 266 IPR032474 -
Cmu01g1363 1124 SMART Piwi_a_2 618 934 IPR003165 GO:0003676(InterPro)
Cmu01g1363 1124 Gene3D - 506 681 - -
Cmu01g1363 1124 FunFam protein argonaute 10-like 686 969 - -
Cmu01g1363 1124 ProSiteProfiles PAZ domain profile. 330 442 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cmu01g1363 1124 Pfam PAZ domain 352 459 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cmu01g1363 1124 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 122 955 - GO:0003723(PANTHER)|GO:0004521(PANTHER)|GO:0005737(PANTHER)|GO:0035194(PANTHER)
Cmu01g1363 1124 SMART DUF1785_2 276 328 IPR014811 -
Cmu01g1363 1124 Pfam Mid domain of argonaute 525 602 IPR032473 -
Cmu01g1363 1124 CDD Piwi_ago-like 486 933 IPR045246 -
Cmu01g1363 1124 ProSiteProfiles Piwi domain profile. 618 934 IPR003165 GO:0003676(InterPro)
Cmu01g1363 1124 Pfam Argonaute linker 1 domain 278 327 IPR014811 -
Cmu01g1363 1124 CDD PAZ_argonaute_like 328 441 - -
Cmu01g1363 1124 MobiDBLite consensus disorder prediction 1 92 - -
Cmu01g1363 1124 SUPERFAMILY Ribonuclease H-like 613 935 IPR012337 -
Cmu01g1363 1124 Gene3D - 686 968 IPR036397 GO:0003676(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1363 Cmu-Chr1:27102881 Cmu04g1293 Cmu-Chr4:27258275 7.90E-300 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1363 K11593 - csv:116403995 1631.31