Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1374 ATGACTTTCCCTTTCCCATTACTTTTCCTCATTATTATCACCATCTCCTTTTCCCTCCCCTTCCCCTCTCTTGTTCACTCCAAACTCACCCTTGGTTATTACCAAAACACCTGTCCCGACTTCGAGAAGATCATTCGTGAAACTGTCACCAATAAACAAATCACCAGCCCTGTCACGGCCGCTGGAACCCTTCGCCTCTTCTTCCACGACTGCATGGTTGATGGTTGCGACGCCTCCATCCTCATTTCCTCCAACTCCTTCAACCAAGCCGAGCGTGAGGCTGAAATCAACCATTCCCTCTCTGGTGACGCCTTCGACGTCGTCGTCCATGCTAAGACCAACCTCGAACTTGCTTGCCCTGGCATTGTCTCTTGTTCCGACATCTTGGCACAGGCAACTCGAGATTTAGTGGTGATGGTGGGAGGGCCATTCTACAACGTTCGATTGGGGAGAAAAGATGGAATGTTATCAAAAGTAGAAAACGTGGAAGGGAACCTTCCAAAAGTGGACTTCTCAATAGACAAACTCATCGATTTCTTCACCCAAAGAGGCTTCACCATCCAAGAACTAGTCGCCCTCTCCGGAGGGCACACCATCGGCTTCTCCCACTGTAAGGAATTCTCCGACCGCCTCTTTAACTTCAACGCCATGTCACCCACCGACCCTGACATTTACCCCAAATTTGCCGAAAAGCTCAAAGCCATGTGTGCCAATTACCTCACAGACACTGCCATGTCAGCTTTCAATGACGTCATGACACCTGGCAAATTCGACAACATGTACTTCCAGAATCTTCCACGTGGCCTTGGCCTACTCGCTACTGACAACGCCCTCTATAAAGACCCTAGGACCAAGCCGTTTGTGGATCTTTACGCCGTTAATCAAACGGCATTTTTTAAGGACTTTGCTCATGCAATGGAGAAGCTTAGCGTTTACGGCGTGAAGACGGGAAGGAAAGGGGAGGTTCGACGAAGGTGTGACCTCTTTAATTCCATTCAGACATGA 1005 49.05 MTFPFPLLFLIIITISFSLPFPSLVHSKLTLGYYQNTCPDFEKIIRETVTNKQITSPVTAAGTLRLFFHDCMVDGCDASILISSNSFNQAEREAEINHSLSGDAFDVVVHAKTNLELACPGIVSCSDILAQATRDLVVMVGGPFYNVRLGRKDGMLSKVENVEGNLPKVDFSIDKLIDFFTQRGFTIQELVALSGGHTIGFSHCKEFSDRLFNFNAMSPTDPDIYPKFAEKLKAMCANYLTDTAMSAFNDVMTPGKFDNMYFQNLPRGLGLLATDNALYKDPRTKPFVDLYAVNQTAFFKDFAHAMEKLSVYGVKTGRKGEVRRRCDLFNSIQT 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27216670 27217930 + CmPI595203_01g013740.1 Cmu01g1374 406880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1374 334 FunFam Peroxidase 32 177 - -
Cmu01g1374 334 Gene3D Peroxidase, domain 2 167 309 - -
Cmu01g1374 334 CDD secretory_peroxidase 28 329 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cmu01g1374 334 PRINTS Haem peroxidase superfamily signature 60 74 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu01g1374 334 PRINTS Haem peroxidase superfamily signature 123 140 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu01g1374 334 PRINTS Haem peroxidase superfamily signature 189 204 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu01g1374 334 PRINTS Haem peroxidase superfamily signature 141 153 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu01g1374 334 PRINTS Haem peroxidase superfamily signature 250 265 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu01g1374 334 ProSitePatterns Peroxidases active site signature. 60 71 IPR019794 GO:0004601(InterPro)
Cmu01g1374 334 Pfam Peroxidase 46 293 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu01g1374 334 FunFam Peroxidase 167 309 - -
Cmu01g1374 334 Gene3D - 32 330 - -
Cmu01g1374 334 ProSitePatterns Peroxidases proximal heme-ligand signature. 189 199 IPR019793 -
Cmu01g1374 334 SUPERFAMILY Heme-dependent peroxidases 29 330 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu01g1374 334 PANTHER - 16 330 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu01g1374 334 PRINTS Plant peroxidase signature 62 82 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu01g1374 334 PRINTS Plant peroxidase signature 141 156 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu01g1374 334 PRINTS Plant peroxidase signature 264 281 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu01g1374 334 PRINTS Plant peroxidase signature 188 200 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu01g1374 334 PRINTS Plant peroxidase signature 248 263 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu01g1374 334 PRINTS Plant peroxidase signature 304 317 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu01g1374 334 PRINTS Plant peroxidase signature 38 57 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu01g1374 334 PRINTS Plant peroxidase signature 122 132 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu01g1374 334 PRINTS Plant peroxidase signature 103 116 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu01g1374 334 ProSiteProfiles Plant heme peroxidase family profile. 28 330 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1374 Cmu-Chr1:27216670 Cmu10g2215 Cmu-Chr10:28284692 3.50E-110 dispersed
Cmu03g1384 Cmu-Chr3:9056983 Cmu01g1374 Cmu-Chr1:27216670 9.60E-71 transposed
Cmu05g1793 Cmu-Chr5:28057743 Cmu01g1374 Cmu-Chr1:27216670 4.70E-72 transposed
Cmu01g1374 Cmu-Chr1:27216670 Cmu06g1720 Cmu-Chr6:28222000 1.40E-122 wgd
Cmu01g1374 Cmu-Chr1:27216670 Cmu09g1798 Cmu-Chr9:34143049 5.00E-109 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1374 K00430 - csv:101220163 585.489