Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1379 ATGGGAATTATGGAATACCATCAAACTTTTCATAATTCCAACACATATTTTGATCAATCTTACTCTTCTTCTTCTTCTTCTTCTTCATGTCTCACTACTTTCAAAGGCCATTCTTCTTACATCTCTTCTCTAACTCTCGCCGGAAAATTCCTCTACTCTGGTTCCTCCGACAAAGAAATCCGATCATGGAGACGAAACCCATCACAAAACTGTGAAGAAAACCAGGAAGAGTTTCAGAACACTATGGTTACAGCCGGACATGGCGCAGTGAAATCCCTTGTGGTTTCATCTGACAAACTTTACAGTGCCCATCAAGACCACAAAATTCGAGTTTGGAAAATCTCTAACGATTACGATCACCATCAAAAGTACACACGTTTAGCTACTCTCCCGACGCTCGGCGATCGGACGGCCAGGCTTTTGACACCCAATAATCAAGTCCAGATCCGACGGCACAAGAAATGCACTTGGGTTCATCATGTTGATACCGTTTCAGCTCTTGCTCTGTCAAACGACGAGTCGCTTCTCTATTCCGTCTCGTGGGATCGGACCCTCAAAATCTGGCGGACTTCCGATTTTAAATGCTTGGAGTCCATCACCGGAGCTCACGACGATGCGATAAACGCCGTCGCGCTCGCCGGAGACGGTGACGTGTATACTGGATCGACGGACAAGAGGATCAAAGTCTGGAGGAAAAACCCAGATGGGAAAAGGCATTTTTTGGTCCAAACACTCGAGAAACACAGCTCCGGAATTAATGCGTTGGCTCTCGCCGGCGATGGGTTGGTTTTATTTTCCGGCGCCTGCGACAAGTCGGTTTTGGTTTGGGAGAAGGAGGAAGGGGGTGGGTTAATGGAGTTGGTGGGTGTGTTGAGAGGCCATTCGAAGGCCATATTGTGTTTGGCTGTGGTGTTGGATTTGGTTTGTAGTGGTTCGGCGGACAAGACGATCAGAATTTGGAAGAAGGTCGTCGCCGGGAATTATGTGTGTTTGAGGGTTTTGGAAGGGCATAACGGTCCCGTCAAGTGTTTGGCGGCGGCGGTTGATCGGTGCAACCAAACCGACATGTCGTTTATGGTTTATAGTGGTGGTTTGGATTGTGATATCAAGGCGTGGCAGATTTCTGTTCCTCTTGTTTAA 1140 47.46 MGIMEYHQTFHNSNTYFDQSYSSSSSSSSCLTTFKGHSSYISSLTLAGKFLYSGSSDKEIRSWRRNPSQNCEENQEEFQNTMVTAGHGAVKSLVVSSDKLYSAHQDHKIRVWKISNDYDHHQKYTRLATLPTLGDRTARLLTPNNQVQIRRHKKCTWVHHVDTVSALALSNDESLLYSVSWDRTLKIWRTSDFKCLESITGAHDDAINAVALAGDGDVYTGSTDKRIKVWRKNPDGKRHFLVQTLEKHSSGINALALAGDGLVLFSGACDKSVLVWEKEEGGGLMELVGVLRGHSKAILCLAVVLDLVCSGSADKTIRIWKKVVAGNYVCLRVLEGHNGPVKCLAAAVDRCNQTDMSFMVYSGGLDCDIKAWQISVPLV 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27277958 27279097 - CmPI595203_01g013790.1 Cmu01g1379 406885

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1379 379 Pfam WD domain, G-beta repeat 194 230 IPR001680 GO:0005515(InterPro)
Cmu01g1379 379 Pfam WD domain, G-beta repeat 286 320 IPR001680 GO:0005515(InterPro)
Cmu01g1379 379 Pfam WD domain, G-beta repeat 329 372 IPR001680 GO:0005515(InterPro)
Cmu01g1379 379 Pfam WD domain, G-beta repeat 29 63 IPR001680 GO:0005515(InterPro)
Cmu01g1379 379 Pfam WD domain, G-beta repeat 156 188 IPR001680 GO:0005515(InterPro)
Cmu01g1379 379 Pfam WD domain, G-beta repeat 83 112 IPR001680 GO:0005515(InterPro)
Cmu01g1379 379 Pfam WD domain, G-beta repeat 241 276 IPR001680 GO:0005515(InterPro)
Cmu01g1379 379 FunFam BnaA09g28200D protein 147 235 - -
Cmu01g1379 379 ProSiteProfiles Trp-Asp (WD) repeats profile. 245 286 IPR001680 GO:0005515(InterPro)
Cmu01g1379 379 SMART WD40_4 192 231 IPR001680 GO:0005515(InterPro)
Cmu01g1379 379 SMART WD40_4 327 373 IPR001680 GO:0005515(InterPro)
Cmu01g1379 379 SMART WD40_4 77 113 IPR001680 GO:0005515(InterPro)
Cmu01g1379 379 SMART WD40_4 27 64 IPR001680 GO:0005515(InterPro)
Cmu01g1379 379 SMART WD40_4 284 321 IPR001680 GO:0005515(InterPro)
Cmu01g1379 379 SMART WD40_4 150 189 IPR001680 GO:0005515(InterPro)
Cmu01g1379 379 SMART WD40_4 238 277 IPR001680 GO:0005515(InterPro)
Cmu01g1379 379 ProSiteProfiles Trp-Asp (WD) repeats profile. 200 230 IPR001680 GO:0005515(InterPro)
Cmu01g1379 379 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 157 188 - -
Cmu01g1379 379 Gene3D - 128 377 IPR015943 GO:0005515(InterPro)
Cmu01g1379 379 ProSiteProfiles Trp-Asp (WD) repeats profile. 34 63 IPR001680 GO:0005515(InterPro)
Cmu01g1379 379 ProSiteProfiles Trp-Asp (WD) repeats profile. 157 198 IPR001680 GO:0005515(InterPro)
Cmu01g1379 379 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 291 321 - -
Cmu01g1379 379 CDD WD40 30 373 - -
Cmu01g1379 379 SUPERFAMILY WD40 repeat-like 28 374 IPR036322 GO:0005515(InterPro)
Cmu01g1379 379 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 245 277 - -
Cmu01g1379 379 Gene3D - 20 127 IPR015943 GO:0005515(InterPro)
Cmu01g1379 379 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 21 375 IPR045182 -
Cmu01g1379 379 ProSiteProfiles Trp-Asp (WD) repeats profile. 291 321 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1379 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1379 Cmu-Chr1:27277958 Cmu06g1800 Cmu-Chr6:28956683 3.10E-46 dispersed
Cmu01g1379 Cmu-Chr1:27277958 Cmu05g2656 Cmu-Chr5:35140986 1.90E-48 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g871 . . . . . Bpe13g00263 . . . . . . . . . . . Bhi02g00576 Tan09g2327 Cmetu02g1365 . . . . Cla06g01714 . . Cco06g1956 . . Cre06g2615 . . . . . . . . . . . . . . . . . Cmo10g00081 . . . . . . . . . . . . . . Cla01g01398 Cam01g1460 Cec01g1499 . Clacu01g1484 Cmu01g1379 Cre01g1294 . Csa01g00089 Chy02g02631 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013452 1 1 1 0 1 1 1 1 1 1 1 1 2 0 1 1 1 1 0 1 1 1 1 1 0 0 1 2 1 0 26