Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1380 ATGTTTCAAAGAATCATTAATCGAAGAGTAAACAAGACGAAGACGAAGGTTGTTTCTCTCCATGTTTCCCCACCGAAACCTACCTTCTTCCTTTCATGTCGCAACTTCACTTCCCAATCTAGCTCCGCCCTAGACACCGCCACCGCCGCCGCGGATATCGCCAATCTTGTCCTCGAATCTGACCCCAAAAGCTTGAGAGGATCCCTCCATGGATTACAAGTTCAATTTACCCCTGAACTTGTGGACAAGGTTCTCAAGCGCCTTTGGTTCCATGGACCGAAAGCGCTGCAATTCTTCAAACACCTTGAGTACCATCCATCTTATGCCCATTCCTCGTCTTCCTTTGACCATGTCATCGACATCGCAGGCCGTATGCGCGACTACAAGACCGTATGGGCTCTAGTGGCTCGAATGCGATCTCGCCGGATTGGACCCAGTTCAAAAACCTTCGCAATTATAGCTGAGAGGTTCGTCGGCGCTGGAAAACCAGACAGAGCAATCAAGGTTTTCTTGTCGATGCGGGAGCATGGCTGTCGTCAGGACCTGCATTCGTTTAACACCATTCTCGACATTCTCTGTAAGTCAAAACGTGTAGAAATGGCTTACAACAATCTGTTTAAGGTTTTGAGAGGAAAATTTAAGGCTGATGTTGTTAGTTATAACATAATTGCAAATGGGTGGTGCTTGATTAAGCGTACACCCAAAGCGTTGGAGGTTTTGAAGGAGATGGTGGAAAGAGGTTTAACTCCAACTATTACTACTTACAATATAGTTTTAAAAGGGTATTTTAGAGCTGGTCAGATTAAGGAAGCTTGGGAATTCTTTTTGCAAATGAAAGAAAGGGAAGTTGAAATTGACGTTGTTACTTATACTACTATGGTTCATGGGTTTGGTGTTGTTGGTGAAATTAAAAGGGCTCGAAAGGTTTTCGACGAGATGGTTGGCGAAGGGGTTCTTCCTTCAACAGCAACTTACAATGCTATGATTCAGGTTTTGTGTAAGAAAGACAGTGTGGAGAATGCAGTATTGTTGTTTGAGGAGATGATTAAAAAGGGTCATGTGCCAAATTTGACCACTTATAACGTGGTTATAAGAGGATTGTGTCATGCGGGTAATATGGAAAAGGCTATGGAGTTTATGGAGAGAATGAAAACTGATGGGTGTGAGCCAAATGTTCAGACATATAATGTCGCTATTCGGTATTTTTGTGATGCTGGTGACATAGAAAAGGGGTTGAATATGTTTGAGAAGATGGGGCAGGGGAGCTGTTTACCAAATTTGGATACGTATAATGTTTTGATTAGTGCAATGTTTGTGAGGAAAAAGTCTGAAGATTTAGTGGCTGCTGGGAAGCTGTTGCTTGAGATGATTGATAGAGGATTCCTCCCTCGAAAGTTCACTTTCAATCGAGTTCTCAATGGTCTTTTGCTGACGGGTAATCAAGTGCCTTCATCTGATCTTGTTGTGAAGCTGGTCACCTCAGAACCCGTTCCATTCTTCCTGAAGATGTCAAACAAGATTTTGAACTACACCTGTGGATCCGGAAGTGTTTTAATGGTTTATGGATGGACAAGACAAGATAATGTGGCAACTATCAGAAGCAGAGCAGTCGATTGCCGAAGTCTTCACATCAAACATATCTGCGGCGGCGGCGACGACGACGACTTCATGGCGGCTCTGCCATCCTCTTCCGCTGTACCGGATTCTTCTTCCTCCAGACACCATACCTACAGTAGGAAGCAGAAATCCCTTGGTCTTTTATGTTCAAACTTTTTGAGCTTGTATAACCACGATGGAGTCCATTCGATTGGGCTTGACGATGCAGCATCGCGATTAGGTGTGGAAAGGCGGCGGATCTACGATATTGTGAATGTTTTGGAGAGCGTCGGGGTTCTGTCGAGAAAGGCGAAGAATCAGTACAGCTGGAATGGGTTTGGAGCAATCCCTAAGGCCTTACAAGATCTTAAAGAAGAGGGCTTGAGGGAGAATTGCAGTGCATCCGATGGTAACGATTATGCGAAAGTATCGGATGATGAAGATGAGGATGAAAGATTTTCCAATCCAACCGGAAGCCAGACCTCAACTGCAGCTGTGCCAAAATCATCTTCATCATCATTAAAAGCCGACAATAGAAGGGAAAAGTCTTTGGCGCTCCTGACTCAAAATTTTGTTAAGCTATTTATCTGCAGTCATGTGAATATGATTTCCCTTGATGAAGCTGCTAAGCTTTTATTAGGAGATGGCCACAATTCATCAATAATGAGAACAAAAGTAAGGAGGCTATATGACATTGCAAATGTGCTGTCTTCTATGAATCTGATCGAAAAGACCCATACAACAGATACTAGAAAGCCTGCTTTTAGGTGGTTGGGAGTGAGGGGTAAAGTCAAGAATGAGCCTACCGTTCTTACAGAGTCCAGAAAAAGAGCATTTGGAACTGATGTAACTAATGTCAGTTATAAGAAGACTAAAGCTGAAAGTTCAGCGTATCAGGGTTTAAATCATTGCCTCAACATGCAAAAGCTAGTGCAGTGTGAGAATTCTTCGCAAGAGGATAGCCAAAATAGTCAGGATCAAGAATGCGAACGAACTTCCAAGAGCTATCAATTTGGACCCTTTGCTCCGGTAACAGTAGCTAAAGTTGGTGTCTCAGACAATAACAATACGAAGCGGACTCATGACTGGGAAAGCCTTTCCTCAACATTCCGTCCTCAGTATCACAATCAAGCCTTAAACGAACTTTTCTCCCATTACGTGGAAGCTTGGAAATCATGGTTTCTGGATGCAATTCTTGTGAAAGTAATTGAATGCAAAGAAAAATTCCAAATCAGAGATGTTGGCTTATCGATTCTGGATGGTCTTCTGGTACTTGTTCTTTATCCACGCCTTGCTGTTTGTTTCCTTCCACTTGTTTCATGCCATATAATTTCTGAAGTCCCACAGGATTCTTTTCCTTTTCATCCTGCTGAACTATCCTGGGAAAATAAATTTTGGAGAAATCAAGAGAAAATAGATGGCAGTGGTTAG 3027 42.91 MFQRIINRRVNKTKTKVVSLHVSPPKPTFFLSCRNFTSQSSSALDTATAAADIANLVLESDPKSLRGSLHGLQVQFTPELVDKVLKRLWFHGPKALQFFKHLEYHPSYAHSSSSFDHVIDIAGRMRDYKTVWALVARMRSRRIGPSSKTFAIIAERFVGAGKPDRAIKVFLSMREHGCRQDLHSFNTILDILCKSKRVEMAYNNLFKVLRGKFKADVVSYNIIANGWCLIKRTPKALEVLKEMVERGLTPTITTYNIVLKGYFRAGQIKEAWEFFLQMKEREVEIDVVTYTTMVHGFGVVGEIKRARKVFDEMVGEGVLPSTATYNAMIQVLCKKDSVENAVLLFEEMIKKGHVPNLTTYNVVIRGLCHAGNMEKAMEFMERMKTDGCEPNVQTYNVAIRYFCDAGDIEKGLNMFEKMGQGSCLPNLDTYNVLISAMFVRKKSEDLVAAGKLLLEMIDRGFLPRKFTFNRVLNGLLLTGNQVPSSDLVVKLVTSEPVPFFLKMSNKILNYTCGSGSVLMVYGWTRQDNVATIRSRAVDCRSLHIKHICGGGDDDDFMAALPSSSAVPDSSSSRHHTYSRKQKSLGLLCSNFLSLYNHDGVHSIGLDDAASRLGVERRRIYDIVNVLESVGVLSRKAKNQYSWNGFGAIPKALQDLKEEGLRENCSASDGNDYAKVSDDEDEDERFSNPTGSQTSTAAVPKSSSSSLKADNRREKSLALLTQNFVKLFICSHVNMISLDEAAKLLLGDGHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGVRGKVKNEPTVLTESRKRAFGTDVTNVSYKKTKAESSAYQGLNHCLNMQKLVQCENSSQEDSQNSQDQECERTSKSYQFGPFAPVTVAKVGVSDNNNTKRTHDWESLSSTFRPQYHNQALNELFSHYVEAWKSWFLDAILVKVIECKEKFQIRDVGLSILDGLLVLVLYPRLAVCFLPLVSCHIISEVPQDSFPFHPAELSWENKFWRNQEKIDGSG 1008
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27286958 27298010 - CmPI595203_01g013800.1 Cmu01g1380 406886

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1380 1008 SMART E2F_TDP_2 579 644 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cmu01g1380 1008 SMART E2F_TDP_2 711 791 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cmu01g1380 1008 SUPERFAMILY Winged helix DNA-binding domain 713 792 IPR036390 -
Cmu01g1380 1008 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 251 285 IPR002885 -
Cmu01g1380 1008 SUPERFAMILY Winged helix DNA-binding domain 578 642 IPR036390 -
Cmu01g1380 1008 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 356 390 IPR002885 -
Cmu01g1380 1008 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 355 IPR002885 -
Cmu01g1380 1008 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 31 436 IPR050667 -
Cmu01g1380 1008 Pfam PPR repeat 218 248 IPR002885 -
Cmu01g1380 1008 Pfam PPR repeat 160 178 IPR002885 -
Cmu01g1380 1008 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 391 425 IPR002885 -
Cmu01g1380 1008 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 146 180 IPR002885 -
Cmu01g1380 1008 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 286 320 IPR002885 -
Cmu01g1380 1008 Gene3D Tetratricopeptide repeat domain 384 496 IPR011990 GO:0005515(InterPro)
Cmu01g1380 1008 Gene3D Tetratricopeptide repeat domain 207 313 IPR011990 GO:0005515(InterPro)
Cmu01g1380 1008 Gene3D Tetratricopeptide repeat domain 91 206 IPR011990 GO:0005515(InterPro)
Cmu01g1380 1008 FunFam E2F transcription factor 8 574 646 - -
Cmu01g1380 1008 Gene3D Tetratricopeptide repeat domain 314 383 IPR011990 GO:0005515(InterPro)
Cmu01g1380 1008 Pfam E2F/DP family winged-helix DNA-binding domain 712 791 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cmu01g1380 1008 Pfam E2F/DP family winged-helix DNA-binding domain 580 644 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cmu01g1380 1008 Gene3D - 574 647 IPR036388 -
Cmu01g1380 1008 Gene3D - 706 793 IPR036388 -
Cmu01g1380 1008 SUPERFAMILY HCP-like 220 379 - -
Cmu01g1380 1008 Pfam PPR repeat family 320 369 IPR002885 -
Cmu01g1380 1008 Pfam PPR repeat family 394 437 IPR002885 -
Cmu01g1380 1008 Pfam PPR repeat family 250 297 IPR002885 -
Cmu01g1380 1008 FunFam E2F transcription factor-like E2FE 706 793 - -
Cmu01g1380 1008 NCBIfam pentatricopeptide repeat 254 287 IPR002885 -
Cmu01g1380 1008 NCBIfam pentatricopeptide repeat 359 392 IPR002885 -
Cmu01g1380 1008 NCBIfam pentatricopeptide repeat 288 321 IPR002885 -
Cmu01g1380 1008 NCBIfam pentatricopeptide repeat 394 426 IPR002885 -
Cmu01g1380 1008 NCBIfam pentatricopeptide repeat 324 356 IPR002885 -
Cmu01g1380 1008 NCBIfam pentatricopeptide repeat 218 251 IPR002885 -
Cmu01g1380 1008 MobiDBLite consensus disorder prediction 687 705 - -
Cmu01g1380 1008 MobiDBLite consensus disorder prediction 662 709 - -
Cmu01g1380 1008 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 216 250 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1380 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1380 Cmu-Chr1:27286958 Cmu02g2221 Cmu-Chr2:35789473 4.70E-09 dispersed
Cmu04g0288 Cmu-Chr4:7675942 Cmu01g1380 Cmu-Chr1:27286958 6.20E-10 transposed
Cmu01g1380 Cmu-Chr1:27286958 Cmu06g1715 Cmu-Chr6:28178885 2.40E-98 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g448 . Blo16g00207 . Bda15g00630 Bpe12g00519 . . . Cmo13g00936 . Cma10g00290 Cma11g00217 Car10g00272 Car11g00196 Sed12g2018 Cpe20g00222 Cpe04g01451 Bhi02g00082 Tan09g2024 Cmetu02g1024 . Hepe09g0284 . . Cla06g01532 Cam06g1689 Cec06g1751 Cco06g1749 Clacu06g1656 Cmu06g1603 Cre06g2415 . Cone16ag0131 Cone13ag0030 Cone19ag0038 Lsi02g00346 . . Cme12g01723 . . . . . . . Bma08g00249 Sed08g2544 Cmo10g00309 Cmo11g00219 Cma13g00908 . Car13g00748 . . . Bhi08g01447 Tan05g2046 Cmetu12g1297 Lac10g0416 Hepe07g2255 . . Cla01g01399 Cam01g1461 Cec01g1502 . Clacu01g1485 Cmu01g1380 Cre01g1296 Lsi06g01403 Csa01g00342 Chy02g02400 Cme02g01814
Vvi17g681 Blo04g00746 Blo16g00207 . . . Bpe13g00264 Bma06g00196 . Cmo13g00935 Cmo18g00114 Cma10g00152 . Car10g00143 . Sed08g0171 Cpe20g00223 . Bhi02g00386 Tan09g2196 Cmetu02g0961 . Hepe09g0165 . . Cla06g01632 Cam06g1815 Cec06g1865 Cco06g1871 Clacu06g1773 Cmu06g1715 Cre06g2535 . Cone16ag0131 . . Lsi02g00346 Csa01g00818 Chy12g01298 Cme12g01723 . . . Bda14g00825 . . Bma03g00799 . Sed08g2543 Cmo10g00164 . Cma13g00908 Cma18g00144 Car13g00748 Car18g00138 Cpe09g01047 Cpe18g00824 Bhi08g01449 Tan05g2045 . . . . . Cla01g01399 Cam01g1461 Cec01g1502 . Clacu01g1485 Cmu01g1380 Cre01g1296 Lsi06g01514 Csa01g00185 Chy02g02548 Cme02g01934
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu01g1380 . 575 929 E2F-DP Transcription Factor Family AT3G48160 56.6 9.4e-102 367.5
Cmu10g1704 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 6.4e-60 228.0
Cmu02g2221 . 21 441 E2F-DP Transcription Factor Family AT2G36010 55.1 1.6e-119 426.8
Cmu04g1074 . 11 451 E2F-DP Transcription Factor Family AT2G36010 55.0 5.9e-119 424.9
Cmu02g2221 . 10 446 E2F-DP Transcription Factor Family AT5G22220 57.4 6.5e-115 411.4
Cmu04g1074 . 11 458 E2F-DP Transcription Factor Family AT5G22220 50.3 1.6e-97 353.6
Cmu08g1381 . 155 344 E2F-DP Transcription Factor Family AT5G22220 58.9 4.0e-56 216.1
Cmu02g2221 . 139 415 E2F-DP Transcription Factor Family AT1G47870 50.9 6.4e-63 238.4
Cmu08g1381 . 151 401 E2F-DP Transcription Factor Family AT1G47870 53.8 6.4e-63 238.4
Cmu10g1704 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 6.4e-60 228.0
Cmu02g2221 . 10 446 E2F-DP Transcription Factor Family AT5G22220 57.4 6.5e-115 411.4
Cmu04g1074 . 11 458 E2F-DP Transcription Factor Family AT5G22220 50.3 1.6e-97 353.6
Cmu08g1381 . 155 344 E2F-DP Transcription Factor Family AT5G22220 58.9 4.0e-56 216.1
Cmu02g2221 . 21 441 E2F-DP Transcription Factor Family AT2G36010 55.1 1.6e-119 426.8
Cmu04g1074 . 11 451 E2F-DP Transcription Factor Family AT2G36010 55.0 5.9e-119 424.9
Cmu02g2221 . 139 415 E2F-DP Transcription Factor Family AT1G47870 50.9 6.4e-63 238.4
Cmu08g1381 . 151 401 E2F-DP Transcription Factor Family AT1G47870 53.8 6.4e-63 238.4
Cmu01g1380 . 575 929 E2F-DP Transcription Factor Family AT3G48160 56.6 9.4e-102 367.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001341 2 8 2 2 1 2 3 2 2 2 2 2 2 2 2 3 2 4 3 2 2 1 2 2 2 2 2 5 4 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5518 PF02319 E2F_TDP 9.30E-20 CL0123 Cmu TF