Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1400 ATGGGGGAAAAGCCAGAAGTGTTGGAGGCTGTTTTGAAGGGAGCTGTGGATTTGGCTGCTGAGGAAAGGCTGAAGATTTTTGGGCACAATAAGCTCAAGGAAAAGAAGGAAAGCAAATTTTTGAAGTTTTTGGGGTTCATGTGGAATCCTCTATCATGGGTTATGGAAGCTGCTGCAATTATGGCTATTGCACTTGCTAATGGAGGACACCCTGACTGGCAAGATTTTGTTGGTATCATTACCCTACTTATCATCAACTCCACAATCAGTTTTATTGAGGAAAACAATGTAGGAAATGCTGCGGCTGCTCTCATGGCTCGTTTTGCTCCCAAAGCCAAGGTTCTTAGAGATGGAAGGTGGAGCGAGCAAGATGCTTCCATTTTAGTTCCTGGCGACGTAATCAGTGTTAAACTTGGGGACATTATTCCAGCTGATGCACGTCTTCTAGATGGGGATCCACTAAAAATTGACCAGTTTGCGCTTACAAGCGAATCTCTCCCTGTAACGAAGGGTCCTGGTGATGGTGTGTGCTCTAGTTCTACTTGCAAGCAAGGAGAGATTGAAGTTTTGGTCATTGCTACTAGTGTCTACACCTTTTTTGGTAAAGCTGCTCATCTTGTTGACACCACCAATCAAGTGGGACACTTCCAAAAGGTCTTAACAGCCATAGGGAATTTCTGCATATGTTCCATTGTTGTGGGAATGGTAATAGAGATCATTGTAATGTACCCAATTCAGGACCGTGAGTATCGCCCTAGAATTCATAACCTCCTTGTGCTACTAATTGGAGGAATTTCTATAGCCATGCCTACAGTTCTATCTGGTGTCATCATAAAGAGAATGACAGCTATTGAGGAAATGGCAGGCATGGATGTGCTCTGCAGTGATAAGACAGGAACCCTGACTTTTAACAAGTTAACTGTTGACAAAAATCTTGTTGAGGTTTTCAGTAAAGGGATAGATGCAGACACTGTTGTTCTAATGGTTGCTAGAGCATCAAGAATTGAGAAGCAAGATGCTATTGATACTGCCATTGTTGGAATGCTAGCTGATCCAAAGGAGGCACGTGCTGGGATTCAGGAAGTACATTTCCTACCTTTCAATCCTACTGATAAGCGAACAGCTTTGACTTATATCGACCATGAGGGCAAGATGCACAGAGTCAGTAAAGGCGCTCCAGAACAGTCAGAGATAGAGAGAAAAGTTCATCCAGTGATTGATAAATTTGCTGGACGAGGTTTGCGTTCACTTGTTGTAGCATACCAGGAAGTTCCAGAAGGAAGAAAAGAGAGTGCTGGAGGTCCTTGGCAATTCATGGGCCTCTTGCCTCTGTTTGATCCACCAAGACATGATAGTGCAGAGACAATTAGAAGAGCTTTAAATCTCGGCATAAATGTGAAAATGATTACTGGAGATCAGCTGGCTATAGGCAAGGAAACGGGACAGCACAAATACGAGATTTTAAAACACTTGCAAGCTATGAAACATATATGTGGGATGACTGGTGATGGAGTGAATGATGCTCTTGCACTTAAAAAAGCAGACATAGATATAACTGTTGCAGATGCAACTGATGCTGCTCGAAGTGCTTCTAATATTGTTCTTACTGAACCTGGTCTCCGTGTTATCATCAATTCTGTTTTGACTAGTAGAGAAATATTTCAGAGGATGAAGAATTACACGCTTGGTTTCATGTTGCTGGCTCTCATTTGGAAATTTGATTTTCCACCATTTATGGTTATTATCATTGCTATCCTTAATTATGGTACAATCATGACAATATCAAAGGATAGGGTTAAACCATCTCCTCTGCCAGATAGTTGGAAGCTGGCTGAAATTTTTACTATTGGCATTGTACTCGGTAGTTACTTGGCAATGATGACGGTCATATTTTTTTGGGCATCCTATAAAACTAACTTTTTCCCTCGAGTCTTTAGAGTACCAACCCTTGAAAAAACAGCTCATGATGATTTCCGGAAGCTAGCATTAGCTATATATCTTCAAGTGAGCACCATCAGTCAGGCCCTCATTTTTGTTACGCGATCTCGAAGTTGGTCCTATGTCGAGCATCCTGGGGTGTTTCTTGTAGTGGCTTTTATTCTTGCTCAATTGGTTGCCACTCTGATTGCTGTCTATGCTAATTGGAGTTTTGCTGCCATTGAAGGAATTGGTTGGGGTTGGGCTGGCTTTGCTATTCGATATGCTTTGAGTGGGAAGACTTGGGATCTCATGCTTGAGCAAAGGGTTGCTTTCACGAGACAAAAGGATTTCGGTAAGGAACAACGTGAGTTGCAATGGGCTCACGCACAAAGAACGCTGCATGGTTTGCAACAGCCTGATACTAAGATGTTCACTGAGCGAACTCATTTCATAGAACTCAATCACATGGCTGAAGAAGCCAAAAGGAGAGCTGAAATTGCTAGATATGTTGCAAACATCGTCTTTGATTGA 2451 42.31 MGEKPEVLEAVLKGAVDLAAEERLKIFGHNKLKEKKESKFLKFLGFMWNPLSWVMEAAAIMAIALANGGHPDWQDFVGIITLLIINSTISFIEENNVGNAAAALMARFAPKAKVLRDGRWSEQDASILVPGDVISVKLGDIIPADARLLDGDPLKIDQFALTSESLPVTKGPGDGVCSSSTCKQGEIEVLVIATSVYTFFGKAAHLVDTTNQVGHFQKVLTAIGNFCICSIVVGMVIEIIVMYPIQDREYRPRIHNLLVLLIGGISIAMPTVLSGVIIKRMTAIEEMAGMDVLCSDKTGTLTFNKLTVDKNLVEVFSKGIDADTVVLMVARASRIEKQDAIDTAIVGMLADPKEARAGIQEVHFLPFNPTDKRTALTYIDHEGKMHRVSKGAPEQSEIERKVHPVIDKFAGRGLRSLVVAYQEVPEGRKESAGGPWQFMGLLPLFDPPRHDSAETIRRALNLGINVKMITGDQLAIGKETGQHKYEILKHLQAMKHICGMTGDGVNDALALKKADIDITVADATDAARSASNIVLTEPGLRVIINSVLTSREIFQRMKNYTLGFMLLALIWKFDFPPFMVIIIAILNYGTIMTISKDRVKPSPLPDSWKLAEIFTIGIVLGSYLAMMTVIFFWASYKTNFFPRVFRVPTLEKTAHDDFRKLALAIYLQVSTISQALIFVTRSRSWSYVEHPGVFLVVAFILAQLVATLIAVYANWSFAAIEGIGWGWAGFAIRYALSGKTWDLMLEQRVAFTRQKDFGKEQRELQWAHAQRTLHGLQQPDTKMFTERTHFIELNHMAEEAKRRAEIARYVANIVFD 816
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27530587 27535618 + CmPI595203_01g014000.1 Cmu01g1400 406906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1400 816 Gene3D - 72 290 - -
Cmu01g1400 816 FunFam Plasma membrane ATPase 481 549 - -
Cmu01g1400 816 Gene3D - 291 481 IPR023214 -
Cmu01g1400 816 SUPERFAMILY Calcium ATPase, transmembrane domain M 20 743 IPR023298 -
Cmu01g1400 816 PANTHER CALCIUM-TRANSPORTING ATPASE 13 482 - GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER)
Cmu01g1400 816 SMART Cation_ATPase_N_a_2 1 67 IPR004014 -
Cmu01g1400 816 Gene3D - 539 721 - -
Cmu01g1400 816 Pfam Cation transporter/ATPase, N-terminus 19 61 IPR004014 -
Cmu01g1400 816 Pfam haloacid dehalogenase-like hydrolase 290 515 - -
Cmu01g1400 816 Gene3D - 110 194 - -
Cmu01g1400 816 PRINTS H+-transporting ATPase (proton pump) signature 402 420 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cmu01g1400 816 PRINTS H+-transporting ATPase (proton pump) signature 666 687 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cmu01g1400 816 SUPERFAMILY HAD-like 287 554 IPR036412 -
Cmu01g1400 816 Gene3D - 306 445 IPR023299 GO:0000166(InterPro)
Cmu01g1400 816 Pfam E1-E2 ATPase 109 275 - -
Cmu01g1400 816 PRINTS P-type cation-transporting ATPase superfamily signature 157 171 - -
Cmu01g1400 816 PRINTS P-type cation-transporting ATPase superfamily signature 524 536 - -
Cmu01g1400 816 PRINTS P-type cation-transporting ATPase superfamily signature 501 520 - -
Cmu01g1400 816 PRINTS P-type cation-transporting ATPase superfamily signature 294 308 - -
Cmu01g1400 816 Gene3D - 482 538 IPR023214 -
Cmu01g1400 816 Gene3D - 788 811 - -
Cmu01g1400 816 NCBIfam HAD-IC family P-type ATPase 79 313 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cmu01g1400 816 NCBIfam HAD-IC family P-type ATPase 360 574 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cmu01g1400 816 ProSitePatterns E1-E2 ATPases phosphorylation site. 296 302 IPR018303 -
Cmu01g1400 816 FunFam Plasma membrane ATPase 110 194 - -
Cmu01g1400 816 FunFam Plasma membrane ATPase 306 445 - -
Cmu01g1400 816 SUPERFAMILY Calcium ATPase, transduction domain A 110 207 IPR008250 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1400 Cmu-Chr1:27530587 Cmu11g1213 Cmu-Chr11:23652328 0.00E+00 dispersed
Cmu01g1400 Cmu-Chr1:27530587 Cmu06g1693 Cmu-Chr6:27972910 0.00E+00 wgd
Cmu01g1400 Cmu-Chr1:27530587 Cmu09g1767 Cmu-Chr9:33784238 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1400 K01535 - csv:101214920 1368.21