Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1403 ATGGGCATGTTTGTTTTGGTTGTTTCATTGCTTTTACTATCAACCCTTTTCAGCTCTCGCACTTTTGCTCTCACTCCAGATGGCTTAACGTTGTTGGAAATTAGAAGCGCGTTTAATGATAGCAAAAACCTCCTTGGTGATTGGGAAGCTTCTGATGAACTTCCCTGCAAATGGTCTGGTATATCTTGTCACCCTGAGGACCAACGAGTTAGCTCAATTAACTTGCCTTACATGCAACTTGGTGGGTTCATTTCTCCCAGCATTGGTAAACTCAGTAGATTACAAAGACTGGCACTTCACGAAAATGGCTTACGTGGAAATATTCCTAACGAAATCACTGAATGCACTCAGCTCAGAGCTCTGTATTTGAGGTCTAATTATCTCCAAGGTGGCATACCGTCGGATATTGGAAACCTTTCTGCTCTTACAATACTGGATTTGTCAAGCAATTCGTTGAAGGGTGCTATTCCGTCATCCATTGGTCGTCTCTCGCTTCTGCGTCATTTGAATTTGTCCACAAACTTTTTCTCTGGGGAAATACCTGATTTTGGAGTTCTGAGCACATTTGGAAGCAATTCGTTCATTGGTAATCTAGATCTCTGCGGTCATCAAGTTAACAAGGCTTGCCGAACCTCACTGGGATTCCCTGCAGTGTTGCCCCATGCTGAAAGTGATGAAGCTTCTGTTCCTGCAAAAAAATCTTCACACTACGTCAAAGGGGTATTAATTGGTGCAGTGTCCACTATGGGTGTTGCACTTGTAGTGCTTGTTCCATTCTTGTGGATACGGTGGCTATCAAAGAAGGAAAGAGCTGCCAAGAGATACACAGAAGTCAAAAAGCAAGTGGTTCATGAACCAAGCACAAAACTTATTACTTTTCACGGTGACCTACCGTACCCATCATGTGAGATCATAGAAAAGCTGGAGTCACTAGATGAAGAAGATGTTGTCGGTTCTGGAGGATTTGGCATTGTATACCGAATGGTCATGAATGATTGTGGAACATTTGCTGTGAAAAAGATTGATGGAAGCAGAAAAGGTTCAGATCAAGTGTTTGAGAGAGAGTTGGAGATTTTGGGTTGCATCAAACATATAAACTTGGTCAATTTGCGGGGATACTGTAGTCTTCCAACTTCAAAGCTTCTTATCTATGACTTTCTAGCAATGGGCAGCTTAGATGATTTTTTGCACGAACATGGACCAGAAAAACAGCCTTTGGATTGGAGAGCTCGTCTAAGGATAGCCTTCGGCTCTGCCAGGGGGATTGCATACTTGCATCATGATTGTTGTCCAAAGATCGTGCATCGTGATATTAAATCGAGTAACATTCTACTTGATGAAAATTTGGAGCCTCATGTATCAGACTTTGGACTGGCCAAGCTTTTGGTTGATGACGATGCTCATGTCACAACTGTTGTTGCTGGAACGTTTGGCTATTTGGCTCCAGAATACCTACAAAGTGGGAGGGCAACTGAAAAATCAGATGTTTATAGCTTTGGAGTTTTATTATTGGAGCTGGTTACTGGGAAGAGACCAACTGATCCATCATTTGTAAAGCGAGGCTTAAATGTTGTTGGTTGGATGCACACATTATTGGGAGAAAACAAAATGGATGAGATAGTTGACAAAAGATGCAAGGACGTTGATGCTGATACTGTAGAAGCAATTCTCGAAATAGCAGCCAAATGCACGGATGCCGACCCAGACAATCGGCCATCAATGAGTCAAGTTTTACAGTTTCTTGAGCAAGAAGTCATGTCACCTTGTCCTAGTGATTTCTATGAGTCTCAGTCTGATTATTCTTGA 1806 42.25 MGMFVLVVSLLLLSTLFSSRTFALTPDGLTLLEIRSAFNDSKNLLGDWEASDELPCKWSGISCHPEDQRVSSINLPYMQLGGFISPSIGKLSRLQRLALHENGLRGNIPNEITECTQLRALYLRSNYLQGGIPSDIGNLSALTILDLSSNSLKGAIPSSIGRLSLLRHLNLSTNFFSGEIPDFGVLSTFGSNSFIGNLDLCGHQVNKACRTSLGFPAVLPHAESDEASVPAKKSSHYVKGVLIGAVSTMGVALVVLVPFLWIRWLSKKERAAKRYTEVKKQVVHEPSTKLITFHGDLPYPSCEIIEKLESLDEEDVVGSGGFGIVYRMVMNDCGTFAVKKIDGSRKGSDQVFERELEILGCIKHINLVNLRGYCSLPTSKLLIYDFLAMGSLDDFLHEHGPEKQPLDWRARLRIAFGSARGIAYLHHDCCPKIVHRDIKSSNILLDENLEPHVSDFGLAKLLVDDDAHVTTVVAGTFGYLAPEYLQSGRATEKSDVYSFGVLLLELVTGKRPTDPSFVKRGLNVVGWMHTLLGENKMDEIVDKRCKDVDADTVEAILEIAAKCTDADPDNRPSMSQVLQFLEQEVMSPCPSDFYESQSDYS 601
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27552775 27557345 + CmPI595203_01g014030.1 Cmu01g1403 406909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1403 601 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 387 592 - -
Cmu01g1403 601 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 24 186 - -
Cmu01g1403 601 SMART serkin_6 311 586 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g1403 601 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 72 583 IPR051564 GO:0016020(PANTHER)
Cmu01g1403 601 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Cmu01g1403 601 ProSitePatterns Serine/Threonine protein kinases active-site signature. 433 445 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu01g1403 601 SUPERFAMILY L domain-like 26 206 - -
Cmu01g1403 601 SUPERFAMILY Protein kinase-like (PK-like) 291 582 IPR011009 -
Cmu01g1403 601 Pfam Protein kinase domain 314 579 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g1403 601 ProSiteProfiles Protein kinase domain profile. 311 586 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g1403 601 Pfam Leucine Rich Repeat 166 182 IPR001611 GO:0005515(InterPro)
Cmu01g1403 601 Pfam Leucine Rich Repeat 117 139 IPR001611 GO:0005515(InterPro)
Cmu01g1403 601 Pfam Leucine Rich Repeat 142 163 IPR001611 GO:0005515(InterPro)
Cmu01g1403 601 Gene3D Phosphorylase Kinase; domain 1 270 386 - -
Cmu01g1403 601 Gene3D Ribonuclease Inhibitor 26 211 IPR032675 -
Cmu01g1403 601 Gene3D Transferase(Phosphotransferase) domain 1 387 591 - -
Cmu01g1403 601 ProSitePatterns Protein kinases ATP-binding region signature. 317 340 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1403 Cmu-Chr1:27552775 Cmu08g0297 Cmu-Chr8:7323144 1.50E-74 dispersed
Cmu02g0384 Cmu-Chr2:3478530 Cmu01g1403 Cmu-Chr1:27552775 6.20E-08 transposed
Cmu07g1116 Cmu-Chr7:26195527 Cmu01g1403 Cmu-Chr1:27552775 2.40E-135 transposed
Cmu11g1620 Cmu-Chr11:28478157 Cmu01g1403 Cmu-Chr1:27552775 1.90E-136 transposed
Cmu11g1709 Cmu-Chr11:29264261 Cmu01g1403 Cmu-Chr1:27552775 1.00E-81 transposed
Cmu01g1403 Cmu-Chr1:27552775 Cmu06g1690 Cmu-Chr6:27950540 4.10E-170 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75212 PF00069 Pkinase 7.40E-47 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1403 - - - 0.0