Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1405 ATGGCGGGTCGGAGGGTCTACGGCGGCGGTGGTTGCGACGACGGTGGTAGTATAAGTGGTGTTTCTTCTAATCATAGTGTTTTGCTTCAGAATCGTGGAGGGTCTTTTGCTTCTGAGCCTCTTAATGCTCTGTTCCTTTCTGGGTCATCTTCTTCTACTTCCCCTTCTCTGCTTGATTGTTCTGGTGTAGGTTCAAGATCCATGATGAGTTTCGAAGATATTCGTGGAGGAAATGGATCGAATAGATCGTTCTTTTGCCCTTTCGATAGTGAAGATAATGGGGATGAAGACTTGGATGATTACTTCCATCACCCTGAAAAAAAGAGGCGTTTAACTGTTGATCAAGTCCGGTTCCTCGAGAAAAGTTTCGAGACCGAGAACAAGCTCGAACCGGAAAGGAAAGTTCAATTAGCGAAGGACCTCGGGCTGCAGCCTCGTCAGGTTGCTATATGGTTTCAAAATCGCCGGGCTCGGTGGAAAACCAAACAGCTGGAGAAGGACTATGAGGCTCTTCAATCCAGCTATGGAAGCCTTAAGGTTGACTACGAAAACCTACTCAAGGAGAAGGATTCACTAAAAGCCGAGATTCTTCTCCTAACAGATCAACTGCTACACAAAGAAAAAGAAAGAGGAAACTCTGTGCTGTCTGAAGTTGACAAATTTGGTGAAGAACCACCCGATAATCTGGTTGCTGATTCACATTTGGAGGATGAAGTCTCCAAATCTTCAAAGCTGGGTTGTAAGCAAGAGGATATCAGTTCAGTCAAAAGTGATATATTTGATTCAGATAGCCCACACTACACTGATGGGGTTCACTCTTCACTCCTAGAGCCTGGAGATTCTTCCTATATTTTCGATCCCGATCAGTCCGACTTATCGCAAGACGAAGAAGATAACTTGGGAAAGAATCTATTGCCCCCTTACATCTTCCCAAAGCTAGAAGATGTCGATTACTCTGACCCGCCCACAAGTTCTTGTAATTTTGTATTCCCCATTGAAGACAATGCCCTTTGGTCCTGGTCTTAG 1026 44.83 MAGRRVYGGGGCDDGGSISGVSSNHSVLLQNRGGSFASEPLNALFLSGSSSSTSPSLLDCSGVGSRSMMSFEDIRGGNGSNRSFFCPFDSEDNGDEDLDDYFHHPEKKRRLTVDQVRFLEKSFETENKLEPERKVQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYEALQSSYGSLKVDYENLLKEKDSLKAEILLLTDQLLHKEKERGNSVLSEVDKFGEEPPDNLVADSHLEDEVSKSSKLGCKQEDISSVKSDIFDSDSPHYTDGVHSSLLEPGDSSYIFDPDQSDLSQDEEDNLGKNLLPPYIFPKLEDVDYSDPPTSSCNFVFPIEDNALWSWS 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27572278 27573855 - CmPI595203_01g014050.1 Cmu01g1405 406911

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1405 341 MobiDBLite consensus disorder prediction 278 303 - -
Cmu01g1405 341 SMART HOX_1 105 166 IPR001356 GO:0003677(InterPro)
Cmu01g1405 341 PRINTS Lambda-repressor HTH signature 133 142 IPR000047 GO:0003677(InterPro)
Cmu01g1405 341 PRINTS Lambda-repressor HTH signature 142 158 IPR000047 GO:0003677(InterPro)
Cmu01g1405 341 FunFam Homeobox-leucine zipper protein HAT5 100 164 - -
Cmu01g1405 341 Pfam Homeobox associated leucine zipper 162 203 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu01g1405 341 Coils Coil 175 209 - -
Cmu01g1405 341 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 88 260 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Cmu01g1405 341 Gene3D - 102 169 - -
Cmu01g1405 341 ProSitePatterns 'Homeobox' domain signature. 137 160 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cmu01g1405 341 Pfam Homeodomain 107 160 IPR001356 GO:0003677(InterPro)
Cmu01g1405 341 ProSiteProfiles 'Homeobox' domain profile. 102 162 IPR001356 GO:0003677(InterPro)
Cmu01g1405 341 CDD homeodomain 107 163 IPR001356 GO:0003677(InterPro)
Cmu01g1405 341 SUPERFAMILY Homeodomain-like 90 164 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1405 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1405 Cmu-Chr1:27572278 Cmu10g2192 Cmu-Chr10:27992538 8.10E-30 dispersed
Cmu05g0056 Cmu-Chr5:642310 Cmu01g1405 Cmu-Chr1:27572278 1.40E-22 transposed
Cmu07g0899 Cmu-Chr7:22791708 Cmu01g1405 Cmu-Chr1:27572278 1.60E-20 transposed
Cmu07g0979 Cmu-Chr7:24446647 Cmu01g1405 Cmu-Chr1:27572278 1.10E-18 transposed
Cmu01g1405 Cmu-Chr1:27572278 Cmu05g2517 Cmu-Chr5:34015776 2.30E-29 wgd
Cmu01g1405 Cmu-Chr1:27572278 Cmu09g1761 Cmu-Chr9:33740479 2.10E-25 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g499 Blo04g00758 Blo16g00197 . . . Bpe13g00275 . . Cmo13g00956 Cmo18g00098 . . . . . Cpe20g00203 . . . . . . . . . . . . . . . . Cone16ag0147 . Cone19ag0090 Lsi02g00316 Csa01g00793 Chy12g01323 Cme12g01748 . . . Bda14g00838 . Bpe15g00614 Bma03g00813 . . . . Cma13g00928 Cma18g00128 Car13g00767 Car18g00118 Cpe09g01065 . Bhi08g01418 Tan05g2080 . Lac10g0375 . . . Cla01g01422 Cam01g1489 Cec04g1119 Cco01g1575 Clacu01g1513 Cmu01g1405 Cre01g1323 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003231 3 2 3 3 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5520 PF00046 Homeodomain 1.00E-16 CL0123 Cmu TF