Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1409 ATGAGAGAAACAGAAACCACCATTATTGTTGTGATTAAACTGCTAATGATATTTGGCTTTGTAATGAAATTTCAAACTCTAAAGGCTAATATTGCAGATTTTGATGAGGTGTGGCAGAAAAGAGCTGAAGAAGCCAAGAAGGCTTCCTTTAAGGCCTACAAATCCCATCCAGAAGAAGTCACTAGTAATTTCAACAACCAAGTTCAAAGATACTTTGATGCTACAAATAACACAAGGAGACATTTGAGGAAGTACAATGGTCCATGTTTAGCCACGAATCCGATTGATCGTTGTTGGAGATGCGATAAACATTGGGCTAAAAATCGGAAGAAGCTAGCCGATTGTGCACTTGGGTTCGGTCGTGGAACAACTGGAGGCAAAAATGGAAGGATTTATGTGGTCCGAGATTCGAGCGATAACGACATGTTGAATCCTAAACCAGGAACCCTACGCTATGGTGTGATACAAGATAGACCACTTTGGATCATATTTGCACATGACATGGTGATTAGGCTAAGTGAAGAGCTTATAATGACGGATAACAAGACATTAGATGGTCGTGGTGCCAATGTGCACATTGCTAATGGTGGTCAAATTACTCTACAATTTGTGAACAATATAATCATCCATAACCTTCACATTCATGATATCAAGGCTGGCAATGGTGGCCTTATAAGAGACTCGGTGAACCACTATGGATTGCGAACACCAAGCGATGGTGATGGAATCTCCATGTTTGGAGCCTCAAAGATTTGGATAGATCATGTTTCTATGTCTAATTGTCAAGATGGGCTTATCGATGCGGTCATGGCATCTACTGCCATTACCATTTCCAACTGTCACTTCACCCATCATAACGATGTGATGTTATTAGGTGCAAGTGATAGCTACTCAAATGATCAGATAATGCAGGTAACTCTTGCATTTAATCACTTTGGTAAAGGGTTGGTGCAAAGGATGCCGAGATGTCGATGGGGGTTCTTCCATGTGGTCAATAATGACTACACTCATTGGCTTATGTACGCTATCGGGGGCAGCCACAACCCCACCATTATCAGCCAGGGCAACCGTTTCATTGCTCCACCAAACCCAAATTCCAAAGAGGTAACAAAAAGGGCGTATGCGTCAGAAAGCGAATGGAAATCTTGGAACTGGAGGTCAGAGGGAGATCTGATGATGAATGGAGCTTTTTTTATCCAATCTGGGAACCCCATCAAAAGATACTCCAAGAAAGACGTTATACATTCCAAACCCGGCACCTTCGTCACCAGGCTAACACGATTCGCTGGCCCTTTGAAATGCAGAAAAAACCAACCCTGTTAG 1323 42.4 MRETETTIIVVIKLLMIFGFVMKFQTLKANIADFDEVWQKRAEEAKKASFKAYKSHPEEVTSNFNNQVQRYFDATNNTRRHLRKYNGPCLATNPIDRCWRCDKHWAKNRKKLADCALGFGRGTTGGKNGRIYVVRDSSDNDMLNPKPGTLRYGVIQDRPLWIIFAHDMVIRLSEELIMTDNKTLDGRGANVHIANGGQITLQFVNNIIIHNLHIHDIKAGNGGLIRDSVNHYGLRTPSDGDGISMFGASKIWIDHVSMSNCQDGLIDAVMASTAITISNCHFTHHNDVMLLGASDSYSNDQIMQVTLAFNHFGKGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSHNPTIISQGNRFIAPPNPNSKEVTKRAYASESEWKSWNWRSEGDLMMNGAFFIQSGNPIKRYSKKDVIHSKPGTFVTRLTRFAGPLKCRKNQPC 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27595283 27596965 + CmPI595203_01g014090.1 Cmu01g1409 406915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1409 440 PANTHER PECTATE LYASE 18-RELATED 18 437 IPR045032 GO:0030570(InterPro)
Cmu01g1409 440 SMART amb_all 167 364 IPR002022 -
Cmu01g1409 440 FunFam Pectate lyase 92 433 - -
Cmu01g1409 440 Pfam Pectate lyase, N terminus 30 82 IPR007524 GO:0030570(InterPro)
Cmu01g1409 440 Gene3D - 92 433 IPR012334 -
Cmu01g1409 440 SUPERFAMILY Pectin lyase-like 82 435 IPR011050 -
Cmu01g1409 440 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Cmu01g1409 440 PRINTS Pollen allergen Amb family signature 341 360 IPR018082 -
Cmu01g1409 440 PRINTS Pollen allergen Amb family signature 115 132 IPR018082 -
Cmu01g1409 440 PRINTS Pollen allergen Amb family signature 175 191 IPR018082 -
Cmu01g1409 440 PRINTS Pollen allergen Amb family signature 239 260 IPR018082 -
Cmu01g1409 440 PRINTS Pollen allergen Amb family signature 383 407 IPR018082 -
Cmu01g1409 440 PRINTS Pollen allergen Amb family signature 139 164 IPR018082 -
Cmu01g1409 440 Pfam Pectate lyase 178 358 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1409 Cmu-Chr1:27595283 Cmu10g2242 Cmu-Chr10:28521823 7.10E-180 dispersed
Cmu01g1409 Cmu-Chr1:27595283 Cmu05g2509 Cmu-Chr5:33950432 6.70E-178 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1409 K01728 - csv:101218812 816.609