Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu01g1409 | ATGAGAGAAACAGAAACCACCATTATTGTTGTGATTAAACTGCTAATGATATTTGGCTTTGTAATGAAATTTCAAACTCTAAAGGCTAATATTGCAGATTTTGATGAGGTGTGGCAGAAAAGAGCTGAAGAAGCCAAGAAGGCTTCCTTTAAGGCCTACAAATCCCATCCAGAAGAAGTCACTAGTAATTTCAACAACCAAGTTCAAAGATACTTTGATGCTACAAATAACACAAGGAGACATTTGAGGAAGTACAATGGTCCATGTTTAGCCACGAATCCGATTGATCGTTGTTGGAGATGCGATAAACATTGGGCTAAAAATCGGAAGAAGCTAGCCGATTGTGCACTTGGGTTCGGTCGTGGAACAACTGGAGGCAAAAATGGAAGGATTTATGTGGTCCGAGATTCGAGCGATAACGACATGTTGAATCCTAAACCAGGAACCCTACGCTATGGTGTGATACAAGATAGACCACTTTGGATCATATTTGCACATGACATGGTGATTAGGCTAAGTGAAGAGCTTATAATGACGGATAACAAGACATTAGATGGTCGTGGTGCCAATGTGCACATTGCTAATGGTGGTCAAATTACTCTACAATTTGTGAACAATATAATCATCCATAACCTTCACATTCATGATATCAAGGCTGGCAATGGTGGCCTTATAAGAGACTCGGTGAACCACTATGGATTGCGAACACCAAGCGATGGTGATGGAATCTCCATGTTTGGAGCCTCAAAGATTTGGATAGATCATGTTTCTATGTCTAATTGTCAAGATGGGCTTATCGATGCGGTCATGGCATCTACTGCCATTACCATTTCCAACTGTCACTTCACCCATCATAACGATGTGATGTTATTAGGTGCAAGTGATAGCTACTCAAATGATCAGATAATGCAGGTAACTCTTGCATTTAATCACTTTGGTAAAGGGTTGGTGCAAAGGATGCCGAGATGTCGATGGGGGTTCTTCCATGTGGTCAATAATGACTACACTCATTGGCTTATGTACGCTATCGGGGGCAGCCACAACCCCACCATTATCAGCCAGGGCAACCGTTTCATTGCTCCACCAAACCCAAATTCCAAAGAGGTAACAAAAAGGGCGTATGCGTCAGAAAGCGAATGGAAATCTTGGAACTGGAGGTCAGAGGGAGATCTGATGATGAATGGAGCTTTTTTTATCCAATCTGGGAACCCCATCAAAAGATACTCCAAGAAAGACGTTATACATTCCAAACCCGGCACCTTCGTCACCAGGCTAACACGATTCGCTGGCCCTTTGAAATGCAGAAAAAACCAACCCTGTTAG | 1323 | 42.4 | MRETETTIIVVIKLLMIFGFVMKFQTLKANIADFDEVWQKRAEEAKKASFKAYKSHPEEVTSNFNNQVQRYFDATNNTRRHLRKYNGPCLATNPIDRCWRCDKHWAKNRKKLADCALGFGRGTTGGKNGRIYVVRDSSDNDMLNPKPGTLRYGVIQDRPLWIIFAHDMVIRLSEELIMTDNKTLDGRGANVHIANGGQITLQFVNNIIIHNLHIHDIKAGNGGLIRDSVNHYGLRTPSDGDGISMFGASKIWIDHVSMSNCQDGLIDAVMASTAITISNCHFTHHNDVMLLGASDSYSNDQIMQVTLAFNHFGKGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSHNPTIISQGNRFIAPPNPNSKEVTKRAYASESEWKSWNWRSEGDLMMNGAFFIQSGNPIKRYSKKDVIHSKPGTFVTRLTRFAGPLKCRKNQPC | 440 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 27595283 | 27596965 | + | CmPI595203_01g014090.1 | Cmu01g1409 | 406915 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu01g1409 | 440 | PANTHER | PECTATE LYASE 18-RELATED | 18 | 437 | IPR045032 | GO:0030570(InterPro) | |
Cmu01g1409 | 440 | SMART | amb_all | 167 | 364 | IPR002022 | - | |
Cmu01g1409 | 440 | FunFam | Pectate lyase | 92 | 433 | - | - | |
Cmu01g1409 | 440 | Pfam | Pectate lyase, N terminus | 30 | 82 | IPR007524 | GO:0030570(InterPro) | |
Cmu01g1409 | 440 | Gene3D | - | 92 | 433 | IPR012334 | - | |
Cmu01g1409 | 440 | SUPERFAMILY | Pectin lyase-like | 82 | 435 | IPR011050 | - | |
Cmu01g1409 | 440 | PRINTS | Pollen allergen Amb family signature | 319 | 338 | IPR018082 | - | |
Cmu01g1409 | 440 | PRINTS | Pollen allergen Amb family signature | 341 | 360 | IPR018082 | - | |
Cmu01g1409 | 440 | PRINTS | Pollen allergen Amb family signature | 115 | 132 | IPR018082 | - | |
Cmu01g1409 | 440 | PRINTS | Pollen allergen Amb family signature | 175 | 191 | IPR018082 | - | |
Cmu01g1409 | 440 | PRINTS | Pollen allergen Amb family signature | 239 | 260 | IPR018082 | - | |
Cmu01g1409 | 440 | PRINTS | Pollen allergen Amb family signature | 383 | 407 | IPR018082 | - | |
Cmu01g1409 | 440 | PRINTS | Pollen allergen Amb family signature | 139 | 164 | IPR018082 | - | |
Cmu01g1409 | 440 | Pfam | Pectate lyase | 178 | 358 | IPR002022 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu01g1409 | Cmu-Chr1:27595283 | Cmu10g2242 | Cmu-Chr10:28521823 | 7.10E-180 | dispersed | |
Cmu01g1409 | Cmu-Chr1:27595283 | Cmu05g2509 | Cmu-Chr5:33950432 | 6.70E-178 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu01g1409 | K01728 | - | csv:101218812 | 816.609 |