Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1411 ATGGCGCCGGTTTTATCTCGGTTACTTCTCCGACGGAATGTTCACGCACCATTTCTTCGCACCTCCACCACCGCCTTCAACTTTTGCAGAACAATTCATTCTATAGTTTTCTCTACGGTAGAAGTGGATCAACTATCAGGTTCTAAGCCAGGAGATGTTCACAACTTGGTGCAGGGTAAATGGATTGGATCTTCCGGTTGGCATACTATTGTAGATCCTTTAAATGGAGAACCGTTTATTAGAGTTGCCGAAGTCAATGAAACAGAGATTCAGCCATTTGTGAAGAGTCTGACCAAATGCCCTAAGCATGGCTTACATAATCCTTTCAAATCGCCTGAGAGATATCTGTTGTTTGGAGATGTATCTTCCAAGGCTGCTGACATGCTTTCCAAGCCAGAGGTGACTGACTTCTTCGCAAGGTTAATTCAAAGAGTTTCTCCAAAAAGTTATCAGCAAGCTTGTGCTGAAGTGAATGTCACTGTTAAATTTCTACGGAACTTCTCTGGCGACCAGGTTCGCTTCTTAGCAAGGTCCTTTGCAGTACCTGGAGATCATCTTGGACAACAAAGTCATGGTTTCCGTTGGCCATATGGTCCCGTTGCAATTATCACTCCTTTCAATTTCCCATTAGAAATTCCTGTACTTCAGGTGATGGGTGCACTTTACATGGGCAACAAACCTGTTTTAAAAGTTGATAGCAAGGTTAGCATAGTTATGGAGCAAATGATTCGATTGCTTCACCATTGTGGGCTACCTTTGGAAGATCTAGATTTTATAAATTGTGATGGGAAGACAATGAACAAGTTATTGATTGAGGCAAATCCATCCATGACTCTTTTTACCGGCAGCTCAAGGGTGGCAGATAAGTTGGCTGTAGACTTGAAGGGCCGCATTAAATTGGAAGATGCAGGTTTCGATTGGAAAATCTTAGGACCTGATGTTCGAGAGGAAGACTATGTTGCATGGGTTTGTGACCAAGATGCATATGCTTGTAGTGGCCAGAAGTGCTCGGCACAATCGATACTGTTCATGCATGAGAACTGGTCAACGACTTCACTTATTTCAAAGATAAAGAATCTTGCAGAGAGAAGAAATTTGACCGATTTAACAATTGGCCCAGTTCTTACATTCACAAATGAAATGATACTAGATCATATGAATAAATTGCTCAAAATACCAGGGGCAAAGTTACTCTTTGGTGGTGAACCTCTAAAAAACCATTCCATTCCACCCATATATGGTGCTATAAAACCCACTGCATTATATATTCCACTCGAAGAAATGATGAAAGATGAGAATTATGAGCTCGTGACTAAAGAAATTTTTGGACCATTCCAGATTATTACGGAATACAAGAGAGATCAACTTCCAGTTGTGTTGGATGCTCTTGAGCGGATGCATGCTCATCTAACCGCCGCTGTTGTTTCAAACGACCCTCTTTTTTTGCAGGAAGTTATTGGCAATACGGTGAACGGAACGACATATGTAGGTTTACGAGCGAGGACAACAGGAGCTCCGCAAAACCATTGGTTTGGACCTGCCGGAGACCCTAGGGGTGCAGGTATCGGAACCCCGGAAGCCATCAAACTTGTATGGTCTTGCCATAGAGAGATCATATATGATATTGGCCCGTTGCCCTTGAATTGGACAGTTCCACCATCGACTTGA 1668 42.69 MAPVLSRLLLRRNVHAPFLRTSTTAFNFCRTIHSIVFSTVEVDQLSGSKPGDVHNLVQGKWIGSSGWHTIVDPLNGEPFIRVAEVNETEIQPFVKSLTKCPKHGLHNPFKSPERYLLFGDVSSKAADMLSKPEVTDFFARLIQRVSPKSYQQACAEVNVTVKFLRNFSGDQVRFLARSFAVPGDHLGQQSHGFRWPYGPVAIITPFNFPLEIPVLQVMGALYMGNKPVLKVDSKVSIVMEQMIRLLHHCGLPLEDLDFINCDGKTMNKLLIEANPSMTLFTGSSRVADKLAVDLKGRIKLEDAGFDWKILGPDVREEDYVAWVCDQDAYACSGQKCSAQSILFMHENWSTTSLISKIKNLAERRNLTDLTIGPVLTFTNEMILDHMNKLLKIPGAKLLFGGEPLKNHSIPPIYGAIKPTALYIPLEEMMKDENYELVTKEIFGPFQIITEYKRDQLPVVLDALERMHAHLTAAVVSNDPLFLQEVIGNTVNGTTYVGLRARTTGAPQNHWFGPAGDPRGAGIGTPEAIKLVWSCHREIIYDIGPLPLNWTVPPST 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27608105 27613047 - CmPI595203_01g014110.1 Cmu01g1411 406917

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1411 555 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 47 304 IPR016162 GO:0016491(InterPro)
Cmu01g1411 555 PANTHER ALPHA-AMINOADIPIC SEMIALDEHYDE DEHYDROGENASE 54 549 IPR044638 GO:0003842(PANTHER)|GO:0004029(InterPro)|GO:0005739(PANTHER)|GO:0010133(PANTHER)
Cmu01g1411 555 Pfam Aldehyde dehydrogenase family 69 499 IPR015590 GO:0016491(InterPro)
Cmu01g1411 555 SUPERFAMILY ALDH-like 53 523 IPR016161 GO:0016491(InterPro)
Cmu01g1411 555 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 329 340 IPR016160 GO:0016491(InterPro)
Cmu01g1411 555 FunFam Aldehyde dehydrogenase 12 312 500 - -
Cmu01g1411 555 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 306 497 IPR016163 GO:0016620(InterPro)
Cmu01g1411 555 FunFam probable aldehyde dehydrogenase 46 304 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1411 K00294 - - csv:101214440 1090.49
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g517 . Blo16g00194 . . . Bpe13g00279 . . Cmo13g00961 . . . . . . Cpe20g00200 . . . . . . . . . . . . . . . . Cone16ag0152 . . . Csa01g00788 Chy12g01328 Cme12g01755 . . Bda11g01689 . . . . . Sed08g2576 . . Cma13g00931 . Car13g00771 . . . Bhi08g01409 Tan05g2088 Cmetu12g1329 Lac10g0368 . . . Cla01g01428 Cam01g1495 Cec01g1535 Cco01g1581 Clacu01g1519 Cmu01g1411 Cre01g1329 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu06g1068 . 1 502 Aldehyde Dehydrogenase Gene Family AT3G24503 69.8 6.2e-212 733.8
Cmu02g1657 . 51 535 Aldehyde Dehydrogenase Gene Family AT3G24503 54.7 3.9e-158 555.1
Cmu06g1740 . 66 550 Aldehyde Dehydrogenase Gene Family AT3G24503 54.1 2.2e-153 539.3
Cmu06g1740 . 1 550 Aldehyde Dehydrogenase Gene Family AT3G48000 76.2 2.1e-250 861.7
Cmu02g1657 . 1 535 Aldehyde Dehydrogenase Gene Family AT3G48000 75.3 8.3e-247 849.7
Cmu06g1068 . 18 502 Aldehyde Dehydrogenase Gene Family AT3G48000 54.8 3.1e-161 565.5
Cmu02g1657 . 1 385 Aldehyde Dehydrogenase Gene Family AT1G23800 76.9 6.2e-170 594.0
Cmu06g1740 . 1 394 Aldehyde Dehydrogenase Gene Family AT1G23800 72.3 6.0e-165 577.4
Cmu06g1068 . 18 346 Aldehyde Dehydrogenase Gene Family AT1G23800 54.7 1.1e-102 370.5
Cmu11g1577 . 7 482 Aldehyde Dehydrogenase Gene Family AT4G34240 63.9 1.2e-181 633.3
Cmu11g1578 . 7 484 Aldehyde Dehydrogenase Gene Family AT4G34240 63.2 5.3e-177 617.8
Cmu11g1577 . 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 71.8 3.2e-177 618.2
Cmu11g1578 . 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 72.0 2.7e-176 615.1
Cmu02g2308 . 67 478 Aldehyde Dehydrogenase Gene Family AT1G44170 50.5 1.7e-117 419.9
Cmu07g0895 . 21 499 Aldehyde Dehydrogenase Gene Family AT4G36250 63.0 6.9e-184 640.6
Cmu02g2308 . 2 480 Aldehyde Dehydrogenase Gene Family AT4G36250 56.2 3.4e-159 558.5
Cmu02g1870 . 37 609 Aldehyde Dehydrogenase Gene Family AT1G79440 65.9 8.2e-215 743.4
Cmu09g1597 . 12 502 Aldehyde Dehydrogenase Gene Family AT2G14170 82.5 4.9e-240 827.4
Cmu01g1773 . 285 719 Aldehyde Dehydrogenase Gene Family AT2G14170 68.3 2.3e-181 632.5
Cmu06g1717 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 81.8 7.9e-252 866.3
Cmu06g1717 . 1 503 Aldehyde Dehydrogenase Gene Family AT3G48170 81.7 1.1e-253 872.5
Cmu02g1700 . 1 502 Aldehyde Dehydrogenase Gene Family AT2G24270 89.8 7.2e-269 922.9
Cmu01g1411 . 21 555 Aldehyde Dehydrogenase Gene Family AT5G62530 78.0 8.0e-261 896.3
Cmu06g0445 . 1 587 Aldehyde Dehydrogenase Gene Family AT3G66658 76.7 1.1e-276 949.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011636 1 3 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 30