Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1457 ATGGGGGTTCCACAGGCCATGGAAATTCTCACCGAGAGAGCCGCACTTGTGCGAGAGTCGCTTCAAAAGAGCCAGAATGTCACCGAGAACATGGTCTCCATTCTTGGCTCCTTCGACTACCGTCTCTCCGCCCTCGAAACAGCAATGCGCCCTACTCAGATAAGAACTCATTCAATTCGGAGGGCGCATGAGAATATTGACAAGACATTGAAGGCTGCAGAAAGTATGCTAGCTCAGTTTGATCTTACACGCAAGGCCGAGGCTAAAATACTCAGGGGGCCACATGAGGACTTAGAAATGTACTTGGAAGCAATTGATCAATTACGAAGCACAAATCGCTACTTTACTGGGAACAAAATTTTCAAATGTAACGATGCTATTCTGACCCACACAAGCAACTTACTTGTTAAAGCCATTTCAAAGCTGGAAGATGAGTTCAGACAGCTTTTAACAAATTACAGTAAGCCAGTGGAACCTGATCGTCTATTCGATTGCCTCCCCAACTCTTTGCGTCCATCATCAGCATCTGCACATCATGGTGATAGTGGTAGCAAAAATAATTCTGACCATCACAACAAAAGCTTAGAAGCTGCCACCTTCATTCCCCCAACTCTTATTCCTCCCAGGGTTCTTCCATTGTTGCATGATTTGGCCCAACAAATGATTCTGGCTGGTCATCAGCAGCAACTGTTTAGAATATACAGGGATACTCGTGCTTCAGTTTTAGAACAGAGTCTTAGGAAATTAGGTGTCGAGAGGCTTAGCAAGGATGATGTCCAGAAAATGCAGTGGGAGGCTCTTGAAGCGAAGATTGGGAACTGGATACATTACATGCGCATTGCTGTCAAATTGCTGTTTGCTGGGGAAAGGAAAATATGTGATCAAATATTTGATGGTGCAGACTCTCTCCAGGATCAATGCTTCGCGGATGTGACTTCAAACAGTGTGTCAGTGCTACTAAGTTTTGGAGAGGCAATTGCCAAGAGCAAGAGATCTCCAGAAAAATTGTTTGTTCTTTTAGACATGTATGAAATAATGCGAGAACTGCAGTCTGAGATTGAAACACTTTTTGGAAGTAAAGCATGTGTTGAAATGCGGGAGTCTGCATTGAACTTAACCACACGCCTTGCCGAGACAGCTCAAGAGACATTTGTTGATTTTGAAGAAGCCGTAGAAAAAGATGCCACAAAAACTGCTGTTCTTGATGGGACTGTTCATCCCTTGACTAGTTATGTGATAAATTACGTCAAGTTTTTGTTTGACTACCAATCTACTCTGAAGCAGCTATTCCAAGATTTTGACGCCAGTGATCCAGATGCTCAGCTAGCAGTGGTAACTACAAGAATTATGCAGGCCCTTCAGACTAATCTTGATGGGAAATCTAAGCAATATAGGGATCCTGCACTAACTCAATTATTTCTGATGAACAATATTCACTATATAGTGAGATCCGTCCGAAGGTCGGAGGCAAAGGATTTGTTGGGTGATGACTGGGTGCAGATACATCGAAGGATTGTTCAGCAGCATGCGAATCAATACAAGCGGATTTCTTGGGCAAAGATTTTGCAGTGCCTCACAGTTCAAGCCTCAGGTAGTGGTGGTGCTTCGGGAGATGCTAGCAGTGGACTTTCAAGAGCTATGGTGAAAGATAGGTTTAAGACTTTTAACATCCAATTTGAAGAGCTTCATCAACGGCAATCTCAGTGGACAGTTCCTGACAGTGAGTTGCGGGAGTCATTGAGGTTGGCAGTTGCTGAAGTTTTATTGCCTGCCTACCGATCCTTCATCAAGCGTTTCGGGCCTATGGTTGAGAATGGGAAAAATCCTCAAAAATATATAAGATATTCACCCGAGGATCTCGAGCGTATGCTAAATGAATTTTTTGAGGGCAAGACATTCAGTGAACAAAAACGCTAG 1917 43.56 MGVPQAMEILTERAALVRESLQKSQNVTENMVSILGSFDYRLSALETAMRPTQIRTHSIRRAHENIDKTLKAAESMLAQFDLTRKAEAKILRGPHEDLEMYLEAIDQLRSTNRYFTGNKIFKCNDAILTHTSNLLVKAISKLEDEFRQLLTNYSKPVEPDRLFDCLPNSLRPSSASAHHGDSGSKNNSDHHNKSLEAATFIPPTLIPPRVLPLLHDLAQQMILAGHQQQLFRIYRDTRASVLEQSLRKLGVERLSKDDVQKMQWEALEAKIGNWIHYMRIAVKLLFAGERKICDQIFDGADSLQDQCFADVTSNSVSVLLSFGEAIAKSKRSPEKLFVLLDMYEIMRELQSEIETLFGSKACVEMRESALNLTTRLAETAQETFVDFEEAVEKDATKTAVLDGTVHPLTSYVINYVKFLFDYQSTLKQLFQDFDASDPDAQLAVVTTRIMQALQTNLDGKSKQYRDPALTQLFLMNNIHYIVRSVRRSEAKDLLGDDWVQIHRRIVQQHANQYKRISWAKILQCLTVQASGSGGASGDASSGLSRAMVKDRFKTFNIQFEELHQRQSQWTVPDSELRESLRLAVAEVLLPAYRSFIKRFGPMVENGKNPQKYIRYSPEDLERMLNEFFEGKTFSEQKR 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28120162 28127425 - CmPI595203_01g014570.1 Cmu01g1457 406963

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1457 638 Pfam Exocyst complex component Exo70 N-terminal 69 151 - -
Cmu01g1457 638 Gene3D Exocyst complex component Exo70 75 638 - -
Cmu01g1457 638 PANTHER EXOCYST COMPLEX PROTEIN EXO70 13 631 IPR004140 GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Cmu01g1457 638 SUPERFAMILY Cullin repeat-like 76 629 IPR016159 -
Cmu01g1457 638 Pfam Exo70 exocyst complex subunit C-terminal 273 626 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1457 K07195 - - csv:105436019 1199.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1457 Cmu-Chr1:28120162 Cmu05g2244 Cmu-Chr5:31873756 2.60E-276 dispersed
Cmu01g1457 Cmu-Chr1:28120162 Cmu03g0819 Cmu-Chr3:2474277 1.20E-82 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu05g2244 . 12 653 EXO70 exocyst subunit family AT5G03540 76.3 1.3e-286 982.2
Cmu01g1457 . 1 638 EXO70 exocyst subunit family AT5G03540 71.1 5.8e-266 913.7
Cmu01g1457 . 1 638 EXO70 exocyst subunit family AT5G52340 80.4 1.7e-299 1025.0
Cmu05g2244 . 14 653 EXO70 exocyst subunit family AT5G52340 74.7 6.0e-273 936.8
Cmu01g1457 . 145 631 EXO70 exocyst subunit family AT5G52350 63.9 1.3e-176 616.7
Cmu05g2244 . 149 653 EXO70 exocyst subunit family AT5G52350 59.5 7.8e-166 580.9
Cmu03g0672 . 1 623 EXO70 exocyst subunit family AT5G58430 66.9 3.7e-246 847.8
Cmu03g0672 . 1 622 EXO70 exocyst subunit family AT1G07000 52.4 1.0e-173 607.1
Cmu07g1515 . 60 673 EXO70 exocyst subunit family AT5G13150 53.5 4.6e-175 611.7
Cmu01g0835 . 115 726 EXO70 exocyst subunit family AT5G13990 54.5 6.0e-189 657.9
Cmu07g1430 . 9 609 EXO70 exocyst subunit family AT1G72470 65.2 4.7e-217 751.1
Cmu07g1430 . 9 607 EXO70 exocyst subunit family AT1G54090 62.0 1.4e-208 723.0
Cmu07g1430 . 9 608 EXO70 exocyst subunit family AT3G14090 64.4 8.5e-219 756.9
Cmu03g1956 . 27 664 EXO70 exocyst subunit family AT5G50380 61.5 8.7e-225 776.9
Cmu03g0976 . 18 630 EXO70 exocyst subunit family AT5G50380 60.9 1.9e-211 732.6
Cmu08g1197 . 11 682 EXO70 exocyst subunit family AT4G31540 73.6 1.4e-294 1008.8
Cmu10g2801 . 35 630 EXO70 exocyst subunit family AT3G09520 55.9 1.9e-178 622.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001390 3 2 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 5 4 2 3 1 2 2 2 2 2 4 2 2 74