Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1462 ATGAACAACGCCACGGCGGACAGCGGCGGATTTCTTTCCTCAAGCAACATCGGCGGTTTCGGCTACGGAATCGGCGTCTCCTTAGGGCTTTTGATTCTCATCACTACAATCCTCTTGGCTTCCTATTACTGTACCAGAAACGGCCTATCCTCCTCCGTCATTCAGAGGACCGCCAATCGCTCTTCACCGCAGGCGGAGGAGGAATTAGAAGCCGTCGTCGTCGAAATCGGACTCGATCAGGAGACGATTACGAGTTATCCGAAATTGCTGTACTCGGAAGCGAAGCTTCAGAAGAACGATTCGACTGCCTCTTGTTGTTCAATCTGTTTGGCCGATTACAAGAACTCGGATGTTCTTCGGCTTTTGCCTGATTGCGGTCATCTCTTTCATCTCAAGTGCGTCGATCCGTGGCTGAGGCTTCATCCGACCTGTCCGGTTTGCCGGACCTCGCCGATTCCGACGCCGTTGTCGACTCCTCTGGCGGAGCAAGTTCCATTGGCGAGTCGGCGCGATTGA 516 53.68 MNNATADSGGFLSSSNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSSVIQRTANRSSPQAEEELEAVVVEIGLDQETITSYPKLLYSEAKLQKNDSTASCCSICLADYKNSDVLRLLPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28161721 28162236 + CmPI595203_01g014620.1 Cmu01g1462 406968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1462 171 CDD RING-H2_EL5-like 105 148 - -
Cmu01g1462 171 FunFam E3 ubiquitin-protein ligase ATL6 66 153 - -
Cmu01g1462 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 152 IPR013083 -
Cmu01g1462 171 SMART ring_2 106 147 IPR001841 -
Cmu01g1462 171 Pfam Ring finger domain 105 148 IPR001841 -
Cmu01g1462 171 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 14 165 IPR045899 -
Cmu01g1462 171 SUPERFAMILY RING/U-box 82 153 - -
Cmu01g1462 171 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1462 Cmu-Chr1:28161721 Cmu10g2549 Cmu-Chr10:32221308 2.20E-44 dispersed
Cmu01g1462 Cmu-Chr1:28161721 Cmu07g1486 Cmu-Chr7:30021457 2.50E-19 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1462 - - - 0.0