Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1493 ATGCCTCTTGGTTGGGTAAAAAAATTGAGTAGAAACAAGGACCATCACAATCACCCCACTTCCTCTCTTAACCTCTTCAAGTCTTCTTCCCCCAAAACTCAACCTAAGAACCCCACCCACAAACCCAAGAGCTTCGATGAGGTTTCTGCTGTGAGTTTCTCACGCAATTCCCCGAGGTCCAGCAGGGATCTGGGCTCTTCTGGCGCTGCCTCTTCTGGGTTTTCCGGTTTTGACTCCGATAGTGGGGATAAAAGTCTTCCTCTTCCTCGACCTGCTATTTCCGGCCTTGGGATTGATCATGGACCCGGGAATGGATCTGGGTCGAGTTCGGTCTCCAGTATTAGTTCTTCCGGGTCTTCGGATGATCATCCATCTGCTCAAGAACAGCTTCAATTTGGAGCTTACAGAGGATTTGTCGATACGAGAATCGAGACAAGGCCAAGAAGTCCAGGTCCAGGATCAAAAGGACCCACCAGTCCTACATCACCTCTCAATCCACGGCTCTGTGGCATGAGTCTGGAGTCTCCTACAACTCATAAGCTGCCGCTTCCTCCAAGCCCTTCTTCCTTGAGCAGCACGAGAGCTATCAATATCGGCGATAATAACGCAGCTATACAATCAAAGTGGAAGAAAGGAAGGCTTCTAGGAAGGGGAACATTTGGGCATGTTTACCTTGGATTTAACAGTGTAAGTGGCCAAATGTGTGCAATTAAGGAGGTCAGGGTTATAAGTGATGACTCAACATCAAAGGAATGTCTCAAGCAATTGAACCAGGAGATTACTCTACTCAGTCAGCTGTCACATCCGAACATTGTCCGGTACTATGGTAGTGAAATGGGTGATGAGTCGCTCTCAGTCTACTTAGAATACATCTCCGGTGGCTCAATTCACAAATTACTTCAGGAATATGGCGCCTTCAAAGAACCTGTTATAAGAAATTATACCCGAAAGATTCTTTCCGGGCTTGCTTATCTGCATGGGAGAAATACAGTGCACAGGGACATAAAAGGGGCAAATATCTTAGTAGATCCGAAAGGCGAGGTCAAGTTGGCGGACTTTGGCATGGCAAAACATATAACGAATTGTACTTCGATGCTTTCCTTTAAAGGCAGTCCTTATTGGATGGCCCCTGAGGTTGTGATGAATACAAATGGCTATAGTCTTGCTGTAGACATTTGGAGTTTAGGATGTACGGTTCTTGAAATGGCAACGTCTAAACCGCCTTGGAGCAAATACGAAGGGGTTGCTGCCATTTTCAAAATTGGGAATAGTAGAGACATTCCTGAAATTCCAGACCATCTCTCCAATGATGCTAAAAATTTTGTGCTATTATGTTTGCAACGGGATCCATCTGCACGTCCTTCTGCTGCAGACCTACTGGATCACCCTTTTGTTCAAGATGCAGTAACACCAAGAGCATCTGATGTTAACTTCTCCACGGATGCGTTCCTCTTTAGCATCGATGGAATCCAGACTCCGCCATTGTTAGATCGGCATCCAAACAGAAAAAGTATAAGCATATGCGATGGAGATTATGTGACAAACCCAACATTCTCTTCCAGAGCTCCGAGGAGTTCTAGGGGAAATGGAAGATTCACATCCTTGCCTGGCTCTCCATGTTCGAGTCCAATAACCGGACACCAGAGCTATTATCTTTCACCACCTCACTCATCTCACATGGGGATGAGTCAAAGCGGATACAATTTGAATGAATACACGTATAACACGAGACCGAACACATTGTTCACCCTTGATCCTTCACGAGATTCATCGCTATTGAAAGTGCAGACTCATCTTGGATCACCAAGAAGAACTCTTTGA 1821 45.63 MPLGWVKKLSRNKDHHNHPTSSLNLFKSSSPKTQPKNPTHKPKSFDEVSAVSFSRNSPRSSRDLGSSGAASSGFSGFDSDSGDKSLPLPRPAISGLGIDHGPGNGSGSSSVSSISSSGSSDDHPSAQEQLQFGAYRGFVDTRIETRPRSPGPGSKGPTSPTSPLNPRLCGMSLESPTTHKLPLPPSPSSLSSTRAINIGDNNAAIQSKWKKGRLLGRGTFGHVYLGFNSVSGQMCAIKEVRVISDDSTSKECLKQLNQEITLLSQLSHPNIVRYYGSEMGDESLSVYLEYISGGSIHKLLQEYGAFKEPVIRNYTRKILSGLAYLHGRNTVHRDIKGANILVDPKGEVKLADFGMAKHITNCTSMLSFKGSPYWMAPEVVMNTNGYSLAVDIWSLGCTVLEMATSKPPWSKYEGVAAIFKIGNSRDIPEIPDHLSNDAKNFVLLCLQRDPSARPSAADLLDHPFVQDAVTPRASDVNFSTDAFLFSIDGIQTPPLLDRHPNRKSISICDGDYVTNPTFSSRAPRSSRGNGRFTSLPGSPCSSPITGHQSYYLSPPHSSHMGMSQSGYNLNEYTYNTRPNTLFTLDPSRDSSLLKVQTHLGSPRRTL 606
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28420481 28424551 - CmPI595203_01g014930.1 Cmu01g1493 406999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1493 606 Pfam Protein kinase domain 210 465 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g1493 606 MobiDBLite consensus disorder prediction 517 540 - -
Cmu01g1493 606 ProSiteProfiles Protein kinase domain profile. 209 465 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g1493 606 SUPERFAMILY Protein kinase-like (PK-like) 207 551 IPR011009 -
Cmu01g1493 606 ProSitePatterns Protein kinases ATP-binding region signature. 215 238 IPR017441 GO:0005524(InterPro)
Cmu01g1493 606 MobiDBLite consensus disorder prediction 21 38 - -
Cmu01g1493 606 MobiDBLite consensus disorder prediction 49 79 - -
Cmu01g1493 606 CDD STKc_MEKK1_plant 208 465 - -
Cmu01g1493 606 FunFam Mitogen-activated protein kinase kinase kinase 207 488 - -
Cmu01g1493 606 MobiDBLite consensus disorder prediction 103 125 - -
Cmu01g1493 606 SMART serkin_6 209 465 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g1493 606 Gene3D Transferase(Phosphotransferase) domain 1 205 482 - -
Cmu01g1493 606 MobiDBLite consensus disorder prediction 1 125 - -
Cmu01g1493 606 MobiDBLite consensus disorder prediction 143 190 - -
Cmu01g1493 606 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 27 472 IPR050538 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1123 Cmu-Chr1:18516062 Cmu01g1493 Cmu-Chr1:28420481 1.60E-18 dispersed
Cmu01g1493 Cmu-Chr1:28420481 Cmu05g0923 Cmu-Chr5:8407934 8.20E-118 dispersed
Cmu01g1493 Cmu-Chr1:28420481 Cmu01g0446 Cmu-Chr1:4611527 1.40E-120 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75214 PF00069 Pkinase 1.10E-71 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1493 K04421 - csv:101203907 1001.12